| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
Click here to switch to the map view.
The map label for this gene is plcN [H]
Identifier: 186476304
GI number: 186476304
Start: 1746966
End: 1749080
Strand: Direct
Name: plcN [H]
Synonym: Bphy_1546
Alternate gene names: 186476304
Gene position: 1746966-1749080 (Clockwise)
Preceding gene: 186476303
Following gene: 186476308
Centisome position: 50.21
GC content: 62.08
Gene sequence:
>2115_bases ATGACCTCAACAAACCGCCGTGATTTCTTGCGCACAGCCGCCCAGGCAGCCGGCTCTGCTACCGCATTGACGATGCTTCC CGTGGGCATCCGCAACGCGCTCGCGATTCCCGCGAACAACAGGACGGGCAGCGTCCGCGACATCGAACATATTGTCGTGC TGATGCAGGAAAACCGTTCGTTCGACCATTACTTCGGCACACTGAGGGGCGTGCGCGGGTTCGGCGATACGCGAGCGATC AACCTGCCGAGCGGCAAGTCGGTGTGGCATCAGCCCGGACTGGGCGGCATCGGCGAAGTGTTGCCATTCCGTCCGACAGC GCCGGACCTCGGCCTGCAATTCCTGGAGGATCTGCCGCACGACTGGCCGACGACGCACGGCGCATGGAACGGCGGTCGCT ACGATCAGTGGGTGCCGAAAAAAGGCACGACGACAATGGCGTACCTCACACGCGACGACATTCCTTTCCACTACCAGCTC GCCGACTCGTTCACAATCTGCGACGCATACCACTGCTCGCTGATGGGCGCGACCGATCCGAACCGCTACTACATGTGGAC GGGCTGGGTCGGCAACGACGGCTCGGGCGGCGGCCCGGTCGTCGACAACTCCGAAGCGGGTTACGGCTGGTCGACGTATC CGGAAGTGCTGGAAGCCGCGGGCATTTCATGGAAGATCTATCAGGACATCGGCACCGGTCTCGATGCAAACGGATCGTGG GGCTGGACCAGCAATCCCTACATCGGCAATTACGGCGACAACGCGCTGCTGTACTTCAACCAGTATCGCAATGCGCAGCC GGGCAACCCGCTGTACGACAAAGCGCGCACGGGCACGAACGTGTCGGCGGGCGACACGTACTTCGACATTCTGCGCAAGG ACGTGCAGAGCAACCAGTTGCCGCAGGTGTCGTGGATCGTCGCGCCAGAAGCGTACTCCGAGCATCCGAACTGGCCCGCG AATTACGGAGCGTGGTATATCGATCAGGTGTTGCAGATTCTGACGTCGAACCCCGAGGTGTGGAGCAAGACCGCGCTCCT CATCAACTACGACGAGAACGACGGCTTCTTCGATCACATGTCGCCGCCGTTTGCGCCGTCGTCGAATGCGAACGGGCTGT CTACCGTCGACACGACCAATGAAATCTATCCGGGCGGCAATAACGGTCAATATGGCGCCGGCCCGTATGGGCTCGGGCCG CGTGTGCCGATGCTCGTCGTGTCCCCTTGGTCGAAGGGCGGCTGGGTATGCTCCGAGGTGTTCGATCACACGTCGGTGAT CCGCCTTATCGAGGCGCGTTTCGGGCACGGCCACAAGCTGTCGGAGCCGAACATCACGCCGTGGCGCCGTACCGTGTGCG GCGACCTGACGTCCGCGTTCAACTTCAAGAATCCGAACGATGCGTTCCCGACACTCCCCTCCACCGCGTCGTACAAGCCG CAGGATCAGCAACGCCATCCCGACTACAAGCCCGTGCCGCCGCTGGTCGGTTCCGTGCCGAAACAGGAATCGGGAGTGCG TCCGGCGCGCGCGCTGCCGTACGAGTTGTTTGTGCGCATCGACGACAACAGCAGTGGCAAAGTGTCCATGCGCTTCGTCA ACACGGGTGACGCCGGCGCGAACTTCCTTGTGTTCGAAGCGCTCAGCGCCGATGCGCCACGCACGTACACGGTCGAAGCG GGCAAGCGTCTCGTCGATCAACTGCCTGTCAAGGCGGACGGTTCCTACGACTTCACGGTGCATGGACCGAACGGGTTCCT GCGTCGTTTTGCCGGCAAGCAGACTTCCGGGTACTTCTGGAACAGCCGCGACCGCGCGAGTCCAGAAGTTGCGGAAGGCT ACGACGTGGCAAACGGCAATCTGCAACTGCGCCTGAAGAATGACGGCAACACGCGCTGTCAGTTCAAGATCGTCAATGCC TACGACTCGGGCACGCCGCTCATCCGTTCGGTGCGCGGCGGCGATAGCGATACCGTCTATCTCGATCTGCGCAAGGTTTA TGGCTGGTACGACCTGACCATCACCGTCGATACCGATCCGTCGTTCACGCGCCGTATTGCAGGTCACGTCGAGACGGGCA AGCCGAGCATGAGCGATCCGGCGCTGGGCGCGTAA
Upstream 100 bases:
>100_bases CACCCGTGATTCACACCGTCGATTGAGTTCGTCCCGCCAGCCTCCATGCCCCCGCGTGGAAGTTCACCTTACCGTTTCTT TCCTCACGATCGAAGCCAAC
Downstream 100 bases:
>100_bases CGCCGCCTTGTTGGAACGATGAGCAAAAGCCCGTATCGTCGTCGACGGTACGGGCTTTTCCTACGCGTCACTCCGGAAGC AGCGACATGCTTATCCGCGC
Product: phospholipase C
Products: NA
Alternate protein names: PLC-N; Phosphatidylcholine cholinephosphohydrolase; Phosphatidylcholine-hydrolyzing phospholipase C; PC-PLC [H]
Number of amino acids: Translated: 704; Mature: 703
Protein sequence:
>704_residues MTSTNRRDFLRTAAQAAGSATALTMLPVGIRNALAIPANNRTGSVRDIEHIVVLMQENRSFDHYFGTLRGVRGFGDTRAI NLPSGKSVWHQPGLGGIGEVLPFRPTAPDLGLQFLEDLPHDWPTTHGAWNGGRYDQWVPKKGTTTMAYLTRDDIPFHYQL ADSFTICDAYHCSLMGATDPNRYYMWTGWVGNDGSGGGPVVDNSEAGYGWSTYPEVLEAAGISWKIYQDIGTGLDANGSW GWTSNPYIGNYGDNALLYFNQYRNAQPGNPLYDKARTGTNVSAGDTYFDILRKDVQSNQLPQVSWIVAPEAYSEHPNWPA NYGAWYIDQVLQILTSNPEVWSKTALLINYDENDGFFDHMSPPFAPSSNANGLSTVDTTNEIYPGGNNGQYGAGPYGLGP RVPMLVVSPWSKGGWVCSEVFDHTSVIRLIEARFGHGHKLSEPNITPWRRTVCGDLTSAFNFKNPNDAFPTLPSTASYKP QDQQRHPDYKPVPPLVGSVPKQESGVRPARALPYELFVRIDDNSSGKVSMRFVNTGDAGANFLVFEALSADAPRTYTVEA GKRLVDQLPVKADGSYDFTVHGPNGFLRRFAGKQTSGYFWNSRDRASPEVAEGYDVANGNLQLRLKNDGNTRCQFKIVNA YDSGTPLIRSVRGGDSDTVYLDLRKVYGWYDLTITVDTDPSFTRRIAGHVETGKPSMSDPALGA
Sequences:
>Translated_704_residues MTSTNRRDFLRTAAQAAGSATALTMLPVGIRNALAIPANNRTGSVRDIEHIVVLMQENRSFDHYFGTLRGVRGFGDTRAI NLPSGKSVWHQPGLGGIGEVLPFRPTAPDLGLQFLEDLPHDWPTTHGAWNGGRYDQWVPKKGTTTMAYLTRDDIPFHYQL ADSFTICDAYHCSLMGATDPNRYYMWTGWVGNDGSGGGPVVDNSEAGYGWSTYPEVLEAAGISWKIYQDIGTGLDANGSW GWTSNPYIGNYGDNALLYFNQYRNAQPGNPLYDKARTGTNVSAGDTYFDILRKDVQSNQLPQVSWIVAPEAYSEHPNWPA NYGAWYIDQVLQILTSNPEVWSKTALLINYDENDGFFDHMSPPFAPSSNANGLSTVDTTNEIYPGGNNGQYGAGPYGLGP RVPMLVVSPWSKGGWVCSEVFDHTSVIRLIEARFGHGHKLSEPNITPWRRTVCGDLTSAFNFKNPNDAFPTLPSTASYKP QDQQRHPDYKPVPPLVGSVPKQESGVRPARALPYELFVRIDDNSSGKVSMRFVNTGDAGANFLVFEALSADAPRTYTVEA GKRLVDQLPVKADGSYDFTVHGPNGFLRRFAGKQTSGYFWNSRDRASPEVAEGYDVANGNLQLRLKNDGNTRCQFKIVNA YDSGTPLIRSVRGGDSDTVYLDLRKVYGWYDLTITVDTDPSFTRRIAGHVETGKPSMSDPALGA >Mature_703_residues TSTNRRDFLRTAAQAAGSATALTMLPVGIRNALAIPANNRTGSVRDIEHIVVLMQENRSFDHYFGTLRGVRGFGDTRAIN LPSGKSVWHQPGLGGIGEVLPFRPTAPDLGLQFLEDLPHDWPTTHGAWNGGRYDQWVPKKGTTTMAYLTRDDIPFHYQLA DSFTICDAYHCSLMGATDPNRYYMWTGWVGNDGSGGGPVVDNSEAGYGWSTYPEVLEAAGISWKIYQDIGTGLDANGSWG WTSNPYIGNYGDNALLYFNQYRNAQPGNPLYDKARTGTNVSAGDTYFDILRKDVQSNQLPQVSWIVAPEAYSEHPNWPAN YGAWYIDQVLQILTSNPEVWSKTALLINYDENDGFFDHMSPPFAPSSNANGLSTVDTTNEIYPGGNNGQYGAGPYGLGPR VPMLVVSPWSKGGWVCSEVFDHTSVIRLIEARFGHGHKLSEPNITPWRRTVCGDLTSAFNFKNPNDAFPTLPSTASYKPQ DQQRHPDYKPVPPLVGSVPKQESGVRPARALPYELFVRIDDNSSGKVSMRFVNTGDAGANFLVFEALSADAPRTYTVEAG KRLVDQLPVKADGSYDFTVHGPNGFLRRFAGKQTSGYFWNSRDRASPEVAEGYDVANGNLQLRLKNDGNTRCQFKIVNAY DSGTPLIRSVRGGDSDTVYLDLRKVYGWYDLTITVDTDPSFTRRIAGHVETGKPSMSDPALGA
Specific function: Hydrolyzes phosphatidylserine as well as phosphatidylcholine [H]
COG id: COG3511
COG function: function code M; Phospholipase C
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial phospholipase C family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007312 - InterPro: IPR008475 - InterPro: IPR017767 - InterPro: IPR006311 [H]
Pfam domain/function: PF05506 DUF756; PF04185 Phosphoesterase [H]
EC number: =3.1.4.3 [H]
Molecular weight: Translated: 77519; Mature: 77388
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSTNRRDFLRTAAQAAGSATALTMLPVGIRNALAIPANNRTGSVRDIEHIVVLMQENRS CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECCCCCCCCHHCEEEEEEEEECCCC FDHYFGTLRGVRGFGDTRAINLPSGKSVWHQPGLGGIGEVLPFRPTAPDLGLQFLEDLPH HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCC DWPTTHGAWNGGRYDQWVPKKGTTTMAYLTRDDIPFHYQLADSFTICDAYHCSLMGATDP CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCEEEEEEEEEEEECCCCC NRYYMWTGWVGNDGSGGGPVVDNSEAGYGWSTYPEVLEAAGISWKIYQDIGTGLDANGSW CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEHHHCCCCCCCCCC GWTSNPYIGNYGDNALLYFNQYRNAQPGNPLYDKARTGTNVSAGDTYFDILRKDVQSNQL CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCC PQVSWIVAPEAYSEHPNWPANYGAWYIDQVLQILTSNPEVWSKTALLINYDENDGFFDHM CCEEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCC SPPFAPSSNANGLSTVDTTNEIYPGGNNGQYGAGPYGLGPRVPMLVVSPWSKGGWVCSEV CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEHHHH FDHTSVIRLIEARFGHGHKLSEPNITPWRRTVCGDLTSAFNFKNPNDAFPTLPSTASYKP HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC QDQQRHPDYKPVPPLVGSVPKQESGVRPARALPYELFVRIDDNSSGKVSMRFVNTGDAGA CHHHCCCCCCCCCHHHCCCCCCCCCCCCHHCCCEEEEEEECCCCCCEEEEEEEECCCCCC NFLVFEALSADAPRTYTVEAGKRLVDQLPVKADGSYDFTVHGPNGFLRRFAGKQTSGYFW CEEEEEEECCCCCEEEEHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHCCCCCCCCEE NSRDRASPEVAEGYDVANGNLQLRLKNDGNTRCQFKIVNAYDSGTPLIRSVRGGDSDTVY CCCCCCCCCHHCCEEECCCEEEEEEECCCCCEEEEEEEECCCCCCHHHHEECCCCCCEEE LDLRKVYGWYDLTITVDTDPSFTRRIAGHVETGKPSMSDPALGA EEEEECCCEEEEEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure TSTNRRDFLRTAAQAAGSATALTMLPVGIRNALAIPANNRTGSVRDIEHIVVLMQENRS CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECCCCCCCCHHCEEEEEEEEECCCC FDHYFGTLRGVRGFGDTRAINLPSGKSVWHQPGLGGIGEVLPFRPTAPDLGLQFLEDLPH HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCC DWPTTHGAWNGGRYDQWVPKKGTTTMAYLTRDDIPFHYQLADSFTICDAYHCSLMGATDP CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCEEEEEEEEEEEECCCCC NRYYMWTGWVGNDGSGGGPVVDNSEAGYGWSTYPEVLEAAGISWKIYQDIGTGLDANGSW CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEHHHCCCCCCCCCC GWTSNPYIGNYGDNALLYFNQYRNAQPGNPLYDKARTGTNVSAGDTYFDILRKDVQSNQL CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCC PQVSWIVAPEAYSEHPNWPANYGAWYIDQVLQILTSNPEVWSKTALLINYDENDGFFDHM CCEEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCC SPPFAPSSNANGLSTVDTTNEIYPGGNNGQYGAGPYGLGPRVPMLVVSPWSKGGWVCSEV CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEHHHH FDHTSVIRLIEARFGHGHKLSEPNITPWRRTVCGDLTSAFNFKNPNDAFPTLPSTASYKP HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC QDQQRHPDYKPVPPLVGSVPKQESGVRPARALPYELFVRIDDNSSGKVSMRFVNTGDAGA CHHHCCCCCCCCCHHHCCCCCCCCCCCCHHCCCEEEEEEECCCCCCEEEEEEEECCCCCC NFLVFEALSADAPRTYTVEAGKRLVDQLPVKADGSYDFTVHGPNGFLRRFAGKQTSGYFW CEEEEEEECCCCCEEEEHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHCCCCCCCCEE NSRDRASPEVAEGYDVANGNLQLRLKNDGNTRCQFKIVNAYDSGTPLIRSVRGGDSDTVY CCCCCCCCCHHCCEEECCCEEEEEEECCCCCEEEEEEEECCCCCCHHHHEECCCCCCEEE LDLRKVYGWYDLTITVDTDPSFTRRIAGHVETGKPSMSDPALGA EEEEECCCEEEEEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10523590 [H]