| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186476281
Identifier: 186476281
GI number: 186476281
Start: 1719252
End: 1720484
Strand: Reverse
Name: 186476281
Synonym: Bphy_1523
Alternate gene names: NA
Gene position: 1720484-1719252 (Counterclockwise)
Preceding gene: 186476284
Following gene: 186476274
Centisome position: 49.45
GC content: 64.07
Gene sequence:
>1233_bases ATGACTGAACTTCGTCTCACCAAGCGGTTCGCAGCATTGCTGATGGCAGGCGGTCTGGTCGCCGGCTGCAGCACGTCGTC GCCGACCAAAATCGACTATAAGAGCGACTCGAAATCGAAGGAAGTGTCACTCGCTGTTCCGCCGAACATGCTCGAGGAAA CCGCGGACCAGCGGTCGCTGCCGCCGCAAAGCGGTCAGACGTCGTTGTCCACGCTGCAGCAGGTGCAGAGCGAGGCGCCC GCCACGGCGGCCGTCGCACCCGTCGTCAATGGCATGCATATCCAGCGCGACGGCACGGAAAGCTGGCTGGTGCTCGATCA CCAGAGCCCCGAACAGGCGTGGCCGCAAATCCGCCGTTTCTGGCAGGAGCAGGGCTTTCTGCTCGTCGTCGACCAGCGCG ACAAGGGCGTGATGGAGACGGACTGGAACGAAACGCACCCATCCATCAACGACGGCCTGATCCGCAGCACGCTGTCCAAG GCGATGGGCAATTCGTACGTGACGGCTGAGCGCAACAAATACCGTACGCGTCTTGAACCGGCGCCGAATGGCGGCACCTA CGTGTTCATCAGCCAAAAAGGCCTGCGCGAAGCGCTCAGCGGCGCGAACAACGACACGAGCAAGTGGGAACCCAAGCCGA ACGATCCCGCGCTCGAAACCGAATACCTGAAGCGTCTGATGGCGACGCTGGCGAAGAACGACACGAGCACGCGCACCGCC AATGCGGCGGCCGTCGCGCCTGTGTCGCCCGCGGGGTCGCAAACCGCGCCGAACGCTGCTGCGGGCGCCAAGTCAGCGGC GGCAGCGACGGCAGCGCAGAACGTCGCGCTGGCCGCTGAAACTCCCACGCGCGATCCTTCGTCGGCAGCGGCAGAGACCT CGGCGCAGTTGTCGTCCACGGAACTGACGCTCGGCGAGCCGTATGACCGCGCGTGGCTACGCGTGGGCCTCGCGCTCGAT CGCAGCAACTTCACCGTCGACGATCGCGATCGCACGCGTGGCCTGTACTTCGTGCGCTACGTCGATCCGAAGGACATGTC GTCGGCGGAGCAAGGCTTCTGGAGCCAGGTGTTCCACGGCCGCAAGGAAAAGGTCGCGAAGCAGTATCGCGTGAACGTGC GCGCAGTGACGCCGAATCAGACGCGAGTCGCCGTCGTCGACGACAAGGGCGATATCGATTCGTCGTCGCAAGCGAAGCAG ATCATGTCGCTGATGGTCGATCAGCTGCACTGA
Upstream 100 bases:
>100_bases GCAGCGTAATCCCCGCTTTTTGCACTTGGCGTCGCCAGGCCGGTAAAATGATGGGTTAGTCCACGGACTTGCCGTGGCGT AGCGGAAGGATTTCCAGAAC
Downstream 100 bases:
>100_bases CAGTCGCGGCCGCGCGTCTGCCGCAGCCGTCTAAAAAGCCCGCGTGACGGATTGCGTTACGCGGGCTTTTTTGTTGCCTG CCTGTCCTGTCAAGAGTGAA
Product: putative exported lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 410; Mature: 409
Protein sequence:
>410_residues MTELRLTKRFAALLMAGGLVAGCSTSSPTKIDYKSDSKSKEVSLAVPPNMLEETADQRSLPPQSGQTSLSTLQQVQSEAP ATAAVAPVVNGMHIQRDGTESWLVLDHQSPEQAWPQIRRFWQEQGFLLVVDQRDKGVMETDWNETHPSINDGLIRSTLSK AMGNSYVTAERNKYRTRLEPAPNGGTYVFISQKGLREALSGANNDTSKWEPKPNDPALETEYLKRLMATLAKNDTSTRTA NAAAVAPVSPAGSQTAPNAAAGAKSAAAATAAQNVALAAETPTRDPSSAAAETSAQLSSTELTLGEPYDRAWLRVGLALD RSNFTVDDRDRTRGLYFVRYVDPKDMSSAEQGFWSQVFHGRKEKVAKQYRVNVRAVTPNQTRVAVVDDKGDIDSSSQAKQ IMSLMVDQLH
Sequences:
>Translated_410_residues MTELRLTKRFAALLMAGGLVAGCSTSSPTKIDYKSDSKSKEVSLAVPPNMLEETADQRSLPPQSGQTSLSTLQQVQSEAP ATAAVAPVVNGMHIQRDGTESWLVLDHQSPEQAWPQIRRFWQEQGFLLVVDQRDKGVMETDWNETHPSINDGLIRSTLSK AMGNSYVTAERNKYRTRLEPAPNGGTYVFISQKGLREALSGANNDTSKWEPKPNDPALETEYLKRLMATLAKNDTSTRTA NAAAVAPVSPAGSQTAPNAAAGAKSAAAATAAQNVALAAETPTRDPSSAAAETSAQLSSTELTLGEPYDRAWLRVGLALD RSNFTVDDRDRTRGLYFVRYVDPKDMSSAEQGFWSQVFHGRKEKVAKQYRVNVRAVTPNQTRVAVVDDKGDIDSSSQAKQ IMSLMVDQLH >Mature_409_residues TELRLTKRFAALLMAGGLVAGCSTSSPTKIDYKSDSKSKEVSLAVPPNMLEETADQRSLPPQSGQTSLSTLQQVQSEAPA TAAVAPVVNGMHIQRDGTESWLVLDHQSPEQAWPQIRRFWQEQGFLLVVDQRDKGVMETDWNETHPSINDGLIRSTLSKA MGNSYVTAERNKYRTRLEPAPNGGTYVFISQKGLREALSGANNDTSKWEPKPNDPALETEYLKRLMATLAKNDTSTRTAN AAAVAPVSPAGSQTAPNAAAGAKSAAAATAAQNVALAAETPTRDPSSAAAETSAQLSSTELTLGEPYDRAWLRVGLALDR SNFTVDDRDRTRGLYFVRYVDPKDMSSAEQGFWSQVFHGRKEKVAKQYRVNVRAVTPNQTRVAVVDDKGDIDSSSQAKQI MSLMVDQLH
Specific function: Unknown
COG id: COG3317
COG function: function code M; Uncharacterized lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44598; Mature: 44467
Theoretical pI: Translated: 7.08; Mature: 7.08
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTELRLTKRFAALLMAGGLVAGCSTSSPTKIDYKSDSKSKEVSLAVPPNMLEETADQRSL CCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEECCCCCCCEEEEECCCHHHHHHHHHHCC PPQSGQTSLSTLQQVQSEAPATAAVAPVVNGMHIQRDGTESWLVLDHQSPEQAWPQIRRF CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCEEEEECCCCCEEEEECCCHHHHHHHHHHH WQEQGFLLVVDQRDKGVMETDWNETHPSINDGLIRSTLSKAMGNSYVTAERNKYRTRLEP HHHCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCHHEECCC APNGGTYVFISQKGLREALSGANNDTSKWEPKPNDPALETEYLKRLMATLAKNDTSTRTA CCCCCEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC NAAAVAPVSPAGSQTAPNAAAGAKSAAAATAAQNVALAAETPTRDPSSAAAETSAQLSST CCEEECCCCCCCCCCCCCHHCCCHHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHHHCCC ELTLGEPYDRAWLRVGLALDRSNFTVDDRDRTRGLYFVRYVDPKDMSSAEQGFWSQVFHG EEECCCCHHHHHHEEEEEECCCCCEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCC RKEKVAKQYRVNVRAVTPNQTRVAVVDDKGDIDSSSQAKQIMSLMVDQLH HHHHHHHHHEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure TELRLTKRFAALLMAGGLVAGCSTSSPTKIDYKSDSKSKEVSLAVPPNMLEETADQRSL CCHHHHHHHHHHHHHCCCEECCCCCCCCEEEECCCCCCCEEEEECCCHHHHHHHHHHCC PPQSGQTSLSTLQQVQSEAPATAAVAPVVNGMHIQRDGTESWLVLDHQSPEQAWPQIRRF CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCEEEEECCCCCEEEEECCCHHHHHHHHHHH WQEQGFLLVVDQRDKGVMETDWNETHPSINDGLIRSTLSKAMGNSYVTAERNKYRTRLEP HHHCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCHHEECCC APNGGTYVFISQKGLREALSGANNDTSKWEPKPNDPALETEYLKRLMATLAKNDTSTRTA CCCCCEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC NAAAVAPVSPAGSQTAPNAAAGAKSAAAATAAQNVALAAETPTRDPSSAAAETSAQLSST CCEEECCCCCCCCCCCCCHHCCCHHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHHHCCC ELTLGEPYDRAWLRVGLALDRSNFTVDDRDRTRGLYFVRYVDPKDMSSAEQGFWSQVFHG EEECCCCHHHHHHEEEEEECCCCCEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCC RKEKVAKQYRVNVRAVTPNQTRVAVVDDKGDIDSSSQAKQIMSLMVDQLH HHHHHHHHHEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]