| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186476244
Identifier: 186476244
GI number: 186476244
Start: 1677345
End: 1678358
Strand: Reverse
Name: 186476244
Synonym: Bphy_1486
Alternate gene names: NA
Gene position: 1678358-1677345 (Counterclockwise)
Preceding gene: 186476246
Following gene: 186476243
Centisome position: 48.24
GC content: 61.64
Gene sequence:
>1014_bases ATGCGCAAATTTTCCCTTCCCGGCTTGACTGGCACGTTTGCAGCAGGCGCGGCGTTCGTCGCGGCAGCGAGCTTTTTCTC TCCCGCCGTCCATGCCAACAACGTGATCGTGCTCAATTCCGGCGAAGCGACACTGAGCCTGATCGACGAGGCGACGCACC AGGTGGTCGACACCGTGCCGACGGGCAAGGAACCGCACCACCTGATGCCCACGCCGGACAATGCCTCGCTGATCGTCGCG AACTCGGTGTCGAACAGTCTGATGTTCGTCGATCCAAAGACGGGCAAGCCGCAGCGCTGGGTCGAAAACGTCGAAGACCC GTATCAGATCGGTTTTTCGCCGGATCACAAGTGGCTCGTGACGACGGGGCTGCGCCTCGACCGCCTCGACATCTATCACT ACGACGGCCATAACATGACGCTCGCGAGTCGCTTGCCGCTCGCTGTGATGCCGAGCCACATCGCGTTCACGAACGACAGC AAGACGGTGTTCATTACGTTGCAGGTGTCGGGCGAACTCGCTGCCATCGATCTCGCCACGCAGACGGTCAAGTGGAAGAT GAAGGTCGGCAAGGTGCCAGCCGGCCTGTGGATGACGCCGGGCGACAAATACCTGCTGATCGGCATGACAGGCGCGGATT ACGTCGCCGTGGTCGACTGGCGCACCCAGAAGATCGTGAAGACGATCACGACGGGCAAGGGCGCGCACAATTTCCGTTCG CTCGCGGATGGCAAGCATGTCGCCGTGTCGAACCGGGTGGCGAGCACGATCAGCATCATCGACGAAGACACGCTCACCAA CGTCGGCGATATCACGGGCCTGATGCCGGGACCCGACGACATGGAACTTTCCGCCGACAAACGCTATCTGTGGGTAACGT TCCGTTTCGCGAAGCACGTGGGCGTCATCGACCTGAGCACGCGCAAGCTGATCCAGACGATCGCTGTCGGCCGCTCGCCG CACGGCATCTATTTTTTCAACCGCGCGCCCGTCACCGCGCCGAACGGGGCGTAA
Upstream 100 bases:
>100_bases GCGGCAGCGCGCCGCGAGCCCACATTTTTCCTCGACCGAGGTCAACCGTTGCATCGCGCAAACGTTCTACAATGGCGGTC ATCCCCTGATGTGAGTCTTC
Downstream 100 bases:
>100_bases CGCGTAACGCGTGACGCAGCGGCGGCGCGCCTTGCCGGCGCGCCGCACAGTGACGCAGAACATCGACGCATATAGAGCCA CATGTTCCACCTGATCGCTT
Product: YVTN beta-propeller repeat-containing protein
Products: NA
Alternate protein names: 40-Residue YVTN Family Beta-Propeller Repeat Protein; Surface Antigen Gene; Cell Surface Protein; Beta-Propeller Repeat-Containing Protein; Beta-Propeller Fold Protein; Cytochrome D1 Heme Region; Triple Helix Repeat-Containing Collagen; Signal Peptide Protein; Surface Layer Protein; WD40 Domain-Containing Protein; Outer Membrane Protein; YVTN Beta-Propeller Repeat Family Protein; YVTN Family Beta-Propeller Repeat Protein; PGRS-Subfamily Gly-Rich Protein; IPT/TIG Domain Protein; Yvtn Beta-Propeller Repeat-Containing Protein; Vegetative Incompatibility; Signal Peptide; Surface Antigen-Like Protein; Surface Antigen; Cytochrome D1 Heme Subunit; Serine/Threonine Protein Kinase; YVTN Family Beta-Propeller Repeat-Containing Protein; Yvtn Beta-Propeller Repeat Family Protein; 40-Residue Yvtn Family Beta-Propeller Repeat Protein; Secreted Protein; Lipoprotein; Exported Protein; YVTN Family Beta-Propeller Repeat Family Protein
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MRKFSLPGLTGTFAAGAAFVAAASFFSPAVHANNVIVLNSGEATLSLIDEATHQVVDTVPTGKEPHHLMPTPDNASLIVA NSVSNSLMFVDPKTGKPQRWVENVEDPYQIGFSPDHKWLVTTGLRLDRLDIYHYDGHNMTLASRLPLAVMPSHIAFTNDS KTVFITLQVSGELAAIDLATQTVKWKMKVGKVPAGLWMTPGDKYLLIGMTGADYVAVVDWRTQKIVKTITTGKGAHNFRS LADGKHVAVSNRVASTISIIDEDTLTNVGDITGLMPGPDDMELSADKRYLWVTFRFAKHVGVIDLSTRKLIQTIAVGRSP HGIYFFNRAPVTAPNGA
Sequences:
>Translated_337_residues MRKFSLPGLTGTFAAGAAFVAAASFFSPAVHANNVIVLNSGEATLSLIDEATHQVVDTVPTGKEPHHLMPTPDNASLIVA NSVSNSLMFVDPKTGKPQRWVENVEDPYQIGFSPDHKWLVTTGLRLDRLDIYHYDGHNMTLASRLPLAVMPSHIAFTNDS KTVFITLQVSGELAAIDLATQTVKWKMKVGKVPAGLWMTPGDKYLLIGMTGADYVAVVDWRTQKIVKTITTGKGAHNFRS LADGKHVAVSNRVASTISIIDEDTLTNVGDITGLMPGPDDMELSADKRYLWVTFRFAKHVGVIDLSTRKLIQTIAVGRSP HGIYFFNRAPVTAPNGA >Mature_337_residues MRKFSLPGLTGTFAAGAAFVAAASFFSPAVHANNVIVLNSGEATLSLIDEATHQVVDTVPTGKEPHHLMPTPDNASLIVA NSVSNSLMFVDPKTGKPQRWVENVEDPYQIGFSPDHKWLVTTGLRLDRLDIYHYDGHNMTLASRLPLAVMPSHIAFTNDS KTVFITLQVSGELAAIDLATQTVKWKMKVGKVPAGLWMTPGDKYLLIGMTGADYVAVVDWRTQKIVKTITTGKGAHNFRS LADGKHVAVSNRVASTISIIDEDTLTNVGDITGLMPGPDDMELSADKRYLWVTFRFAKHVGVIDLSTRKLIQTIAVGRSP HGIYFFNRAPVTAPNGA
Specific function: Unknown
COG id: COG3391
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36591; Mature: 36591
Theoretical pI: Translated: 8.76; Mature: 8.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKFSLPGLTGTFAAGAAFVAAASFFSPAVHANNVIVLNSGEATLSLIDEATHQVVDTVP CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHCCC TGKEPHHLMPTPDNASLIVANSVSNSLMFVDPKTGKPQRWVENVEDPYQIGFSPDHKWLV CCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHCCCCCEEECCCCCCCEEE TTGLRLDRLDIYHYDGHNMTLASRLPLAVMPSHIAFTNDSKTVFITLQVSGELAAIDLAT EECCEEEEEEEEEECCCCEEEHHCCCEEECCCEEEEECCCCEEEEEEEECCCEEEEEEEE QTVKWKMKVGKVPAGLWMTPGDKYLLIGMTGADYVAVVDWRTQKIVKTITTGKGAHNFRS EEEEEEEEECCCCCCCEECCCCCEEEEEECCCCEEEEEECCHHHHHHHHHCCCCCHHHHH LADGKHVAVSNRVASTISIIDEDTLTNVGDITGLMPGPDDMELSADKRYLWVTFRFAKHV HCCCCEEEECCHHHHEEEEECCCCCCCCCHHCCCCCCCCCCEECCCCEEEEEEEEEHHCC GVIDLSTRKLIQTIAVGRSPHGIYFFNRAPVTAPNGA CEEEECHHHHHHHHHCCCCCCCEEEECCCCCCCCCCC >Mature Secondary Structure MRKFSLPGLTGTFAAGAAFVAAASFFSPAVHANNVIVLNSGEATLSLIDEATHQVVDTVP CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHCCC TGKEPHHLMPTPDNASLIVANSVSNSLMFVDPKTGKPQRWVENVEDPYQIGFSPDHKWLV CCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHCCCCCEEECCCCCCCEEE TTGLRLDRLDIYHYDGHNMTLASRLPLAVMPSHIAFTNDSKTVFITLQVSGELAAIDLAT EECCEEEEEEEEEECCCCEEEHHCCCEEECCCEEEEECCCCEEEEEEEECCCEEEEEEEE QTVKWKMKVGKVPAGLWMTPGDKYLLIGMTGADYVAVVDWRTQKIVKTITTGKGAHNFRS EEEEEEEEECCCCCCCEECCCCCEEEEEECCCCEEEEEECCHHHHHHHHHCCCCCHHHHH LADGKHVAVSNRVASTISIIDEDTLTNVGDITGLMPGPDDMELSADKRYLWVTFRFAKHV HCCCCEEEECCHHHHEEEEECCCCCCCCCHHCCCCCCCCCCEECCCCEEEEEEEEEHHCC GVIDLSTRKLIQTIAVGRSPHGIYFFNRAPVTAPNGA CEEEECHHHHHHHHHCCCCCCCEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA