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The map label for this gene is yagI [H]

Identifier: 186476223

GI number: 186476223

Start: 1645896

End: 1646702

Strand: Direct

Name: yagI [H]

Synonym: Bphy_1465

Alternate gene names: 186476223

Gene position: 1645896-1646702 (Clockwise)

Preceding gene: 186476220

Following gene: 186476225

Centisome position: 47.31

GC content: 66.54

Gene sequence:

>807_bases
ATGAGCGACACGAACCCGGACCACAAAACATCGATCCAGGTGATCGAGCGCATGATGCGGCTGCTGGACGCCCTCGCCGC
CCATAGCGACCCGGTCAGCCTGAAGGAACTCGCGCAACGCACCGACCTCCACCCGTCGACGGCCCACCGCATCCTGAACG
ACATGGTGACCTGCCGGCTGGTGGACCGCTCGGACCCTGGCACCTATCGTCTCGGCATGCGGCTGCTGGAACTGGGTAAT
CTCGTCAAGGCGCGTCTGTCGGTGCGCGACGCGGCGCTGACGCCGATGCGAGAACTGCACCGGCTGACGGGCCAGACGGT
GAACCTGTCGGTGCGCCAGGGCGACGAGATCGTCTACATCGAACGCGCCTATTCCGAGCGCTCGGGCATGCAGGTGGTAC
GTGCGATCGGCGGCCGGGCGCCGCTGCATCTGACCTCCGTCGGCAAGCTCTTCCTCGCCGCCGACGAATCGACCCGCGTG
CGCGCCTACGCGACGCGCACGGGCCTGTCGGGACACACGCAGAACAGCATCACCGATCTCGGCAAGCTCGAGCGCGAGTT
GTCGCATGTGCGCCAGCAGGCGTGCGCGCGCGACAACGAAGAACTGGAACTCGGCGTGCGCTGTATCGCAGCCGGCATTT
ACGACGATACAGGCAAGCTCGTTGCGGGCCTTTCGCTGTCGGCGCCCGCCGACCGTCTGCAGGACTCCTGGCTGGGCCAG
TTGAGCAAGACCGCCCTCGTCATCTCCGAATCGCTCGGCTACCAGCCGCAAGCGCAGCCGATGAGCGCCTCGGCGCAAGC
AATCTGA

Upstream 100 bases:

>100_bases
CGAATACCTCAGATTCGATCGCTTCGAACGGCGTTCGCTTTTTTCACAATACGAGATACAATCGGTTCTCCGCTGTTTGA
CGCGTCAACCGTTTAGTCTT

Downstream 100 bases:

>100_bases
CCCGCCCCCTTAGCCACGCAATAAATGCAAGAAGCCCCGCATGCGGGGCTTCTTAGTTTTCGTCGGGTACGCGCGTTGCC
TCTCAGGTCCCGGCGCCGTT

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MSDTNPDHKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTDLHPSTAHRILNDMVTCRLVDRSDPGTYRLGMRLLELGN
LVKARLSVRDAALTPMRELHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADESTRV
RAYATRTGLSGHTQNSITDLGKLERELSHVRQQACARDNEELELGVRCIAAGIYDDTGKLVAGLSLSAPADRLQDSWLGQ
LSKTALVISESLGYQPQAQPMSASAQAI

Sequences:

>Translated_268_residues
MSDTNPDHKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTDLHPSTAHRILNDMVTCRLVDRSDPGTYRLGMRLLELGN
LVKARLSVRDAALTPMRELHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADESTRV
RAYATRTGLSGHTQNSITDLGKLERELSHVRQQACARDNEELELGVRCIAAGIYDDTGKLVAGLSLSAPADRLQDSWLGQ
LSKTALVISESLGYQPQAQPMSASAQAI
>Mature_267_residues
SDTNPDHKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTDLHPSTAHRILNDMVTCRLVDRSDPGTYRLGMRLLELGNL
VKARLSVRDAALTPMRELHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADESTRVR
AYATRTGLSGHTQNSITDLGKLERELSHVRQQACARDNEELELGVRCIAAGIYDDTGKLVAGLSLSAPADRLQDSWLGQL
SKTALVISESLGYQPQAQPMSASAQAI

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=253, Percent_Identity=32.4110671936759, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1788131, Length=258, Percent_Identity=33.3333333333333, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1789999, Length=250, Percent_Identity=30.8, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1786715, Length=255, Percent_Identity=30.1960784313725, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI87082359, Length=230, Percent_Identity=31.7391304347826, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790752, Length=232, Percent_Identity=28.0172413793103, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788581, Length=251, Percent_Identity=23.9043824701195, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29377; Mature: 29246

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTNPDHKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTDLHPSTAHRILNDMVTCRL
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHEEEE
VDRSDPGTYRLGMRLLELGNLVKARLSVRDAALTPMRELHRLTGQTVNLSVRQGDEIVYI
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEE
ERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADESTRVRAYATRTGLSGHTQNSITDL
EEHHCHHHHHHHHHHHCCCCCEEHHHHCEEEEECCCCCEEEEEEECCCCCCCCCHHHHHH
GKLERELSHVRQQACARDNEELELGVRCIAAGIYDDTGKLVAGLSLSAPADRLQDSWLGQ
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHH
LSKTALVISESLGYQPQAQPMSASAQAI
HHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDTNPDHKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTDLHPSTAHRILNDMVTCRL
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHEEEE
VDRSDPGTYRLGMRLLELGNLVKARLSVRDAALTPMRELHRLTGQTVNLSVRQGDEIVYI
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEE
ERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADESTRVRAYATRTGLSGHTQNSITDL
EEHHCHHHHHHHHHHHCCCCCEEHHHHCEEEEECCCCCEEEEEEECCCCCCCCCHHHHHH
GKLERELSHVRQQACARDNEELELGVRCIAAGIYDDTGKLVAGLSLSAPADRLQDSWLGQ
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHH
LSKTALVISESLGYQPQAQPMSASAQAI
HHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]