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The map label for this gene is ycfD [H]

Identifier: 186476160

GI number: 186476160

Start: 1576551

End: 1577663

Strand: Direct

Name: ycfD [H]

Synonym: Bphy_1402

Alternate gene names: 186476160

Gene position: 1576551-1577663 (Clockwise)

Preceding gene: 186476158

Following gene: 186476164

Centisome position: 45.31

GC content: 58.94

Gene sequence:

>1113_bases
ATGCGGCGCTACTGGCAGAAAAAGCCGCTGCTCATCCGTCAGGCCATTCCCGAAATCGCAGCGCCGCTCTCGCGCGACGA
ACTGTTCGAACTGGCCGATCAGGACGAAGTCGAGTCACGTCTCATCACCCACTTTCGCAACAAATGGCAACTCGAGCATG
GTCCGTTTGCTGCAGATGAATTGCCGTCCGTCAAACAACGCGCGTGGACCTTGCTCGTGCAAGGCGTCGACCTGCATAAC
GACCGCGCACGCGCACTGCTCGACCGTTTTCGCTTCGCGCCCGATGCGCGCCTTGACGATCTGATGATCTCGTACGCGAC
GGACGGCGGCGGCGTCGGTCCTCACTTCGACTCTTACGATGTCTTCCTGTTGCAGGTGCACGGCAAGCGTCGCTGGCGAA
TCGGCGCGCAACGCGACCTGACGTTGCAACCGGGTCTGCCGTTGAAAGTGCTTCAACACTTCGAACCGGAAGAAGAATGG
GTGCTGGAGCCGGGCGACATGCTTTATCTGCCGCCCCACATCGCACATGACGGCGTTGCGGAAGGCGAATGCATGACGTG
CTCAATCGGTTTCCGTGCGCCATCGACAGCTGAACTGGCCGCGCAATTCCTCTACTACCTTGCCGAGCGCGGCGAAGCGA
ATGGCTCCGGCGATGGCGCTGCGCTGTATCGTGATCCGCAGCAACCGGCTGTCGCGAACCCCGCGGCACTGCCCGCTGCG
CTCGTGGACCGCGTGGGCGCAATCCTTGCTAAGATCGACTGGAGCGAGAAGGACGTTTCGGCGTTTCTGGGCACCTATCT
GAGTGAACCGAAGCCGAGCGTCGTGTTCGATCCGCCTGAAAAACCGCTCAACCAGGCGCGTTTTTTTAAGCGCGCCAGCA
AGGAAGGCGTGCGGCTCGATCGCAAAACTGTGCTGCTTTACGACACTCGCTCTTATTACCTGAATGGAGAAGAAAGCCGG
TTGTCCGGCGTTAAAAAATGGGTGATTGAACTCGCCGACAACCGCTATATGAGTGCGAAACGCTTTGTAACACTCTCACA
GCAATCGTCGGTGACAGCACTGCTACACGAGTGGTATCGTGCGGGCTGGATACAGACGGGTGAACTGAGATAA

Upstream 100 bases:

>100_bases
AGGTTCAGCGCCTCCATCCCCGGCTTCCGCTTACATGTCTTGCGCACCGTCGCCTGATCAGCCTGCAGCGCTGCTCGGCA
ATCTGACACCATCGCAATTC

Downstream 100 bases:

>100_bases
GATTCGCTCCGCTGTCATACCGTATAGCGAAAAATTGTCTGAGAAAGACAACGTATTGGCCCCGGATTTGTCGACGGTCG
ATATGAAAGTGCATATAATT

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MRRYWQKKPLLIRQAIPEIAAPLSRDELFELADQDEVESRLITHFRNKWQLEHGPFAADELPSVKQRAWTLLVQGVDLHN
DRARALLDRFRFAPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVHGKRRWRIGAQRDLTLQPGLPLKVLQHFEPEEEW
VLEPGDMLYLPPHIAHDGVAEGECMTCSIGFRAPSTAELAAQFLYYLAERGEANGSGDGAALYRDPQQPAVANPAALPAA
LVDRVGAILAKIDWSEKDVSAFLGTYLSEPKPSVVFDPPEKPLNQARFFKRASKEGVRLDRKTVLLYDTRSYYLNGEESR
LSGVKKWVIELADNRYMSAKRFVTLSQQSSVTALLHEWYRAGWIQTGELR

Sequences:

>Translated_370_residues
MRRYWQKKPLLIRQAIPEIAAPLSRDELFELADQDEVESRLITHFRNKWQLEHGPFAADELPSVKQRAWTLLVQGVDLHN
DRARALLDRFRFAPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVHGKRRWRIGAQRDLTLQPGLPLKVLQHFEPEEEW
VLEPGDMLYLPPHIAHDGVAEGECMTCSIGFRAPSTAELAAQFLYYLAERGEANGSGDGAALYRDPQQPAVANPAALPAA
LVDRVGAILAKIDWSEKDVSAFLGTYLSEPKPSVVFDPPEKPLNQARFFKRASKEGVRLDRKTVLLYDTRSYYLNGEESR
LSGVKKWVIELADNRYMSAKRFVTLSQQSSVTALLHEWYRAGWIQTGELR
>Mature_370_residues
MRRYWQKKPLLIRQAIPEIAAPLSRDELFELADQDEVESRLITHFRNKWQLEHGPFAADELPSVKQRAWTLLVQGVDLHN
DRARALLDRFRFAPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVHGKRRWRIGAQRDLTLQPGLPLKVLQHFEPEEEW
VLEPGDMLYLPPHIAHDGVAEGECMTCSIGFRAPSTAELAAQFLYYLAERGEANGSGDGAALYRDPQQPAVANPAALPAA
LVDRVGAILAKIDWSEKDVSAFLGTYLSEPKPSVVFDPPEKPLNQARFFKRASKEGVRLDRKTVLLYDTRSYYLNGEESR
LSGVKKWVIELADNRYMSAKRFVTLSQQSSVTALLHEWYRAGWIQTGELR

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=369, Percent_Identity=35.230352303523, Blast_Score=205, Evalue=4e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 41957; Mature: 41957

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRYWQKKPLLIRQAIPEIAAPLSRDELFELADQDEVESRLITHFRNKWQLEHGPFAADE
CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCHHH
LPSVKQRAWTLLVQGVDLHNDRARALLDRFRFAPDARLDDLMISYATDGGGVGPHFDSYD
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCC
VFLLQVHGKRRWRIGAQRDLTLQPGLPLKVLQHFEPEEEWVLEPGDMLYLPPHIAHDGVA
EEEEEECCCCEEECCCCCCCEECCCCCHHHHHHCCCCHHEEECCCCEEEECCCCCCCCCC
EGECMTCSIGFRAPSTAELAAQFLYYLAERGEANGSGDGAALYRDPQQPAVANPAALPAA
CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHH
LVDRVGAILAKIDWSEKDVSAFLGTYLSEPKPSVVFDPPEKPLNQARFFKRASKEGVRLD
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEC
RKTVLLYDTRSYYLNGEESRLSGVKKWVIELADNRYMSAKRFVTLSQQSSVTALLHEWYR
CEEEEEEECCEEEECCCHHHHHHHHHHHHHHHCCCEECHHHEEEECCCCHHHHHHHHHHH
AGWIQTGELR
HCCCCCCCCC
>Mature Secondary Structure
MRRYWQKKPLLIRQAIPEIAAPLSRDELFELADQDEVESRLITHFRNKWQLEHGPFAADE
CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCHHH
LPSVKQRAWTLLVQGVDLHNDRARALLDRFRFAPDARLDDLMISYATDGGGVGPHFDSYD
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCC
VFLLQVHGKRRWRIGAQRDLTLQPGLPLKVLQHFEPEEEWVLEPGDMLYLPPHIAHDGVA
EEEEEECCCCEEECCCCCCCEECCCCCHHHHHHCCCCHHEEECCCCEEEECCCCCCCCCC
EGECMTCSIGFRAPSTAELAAQFLYYLAERGEANGSGDGAALYRDPQQPAVANPAALPAA
CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHH
LVDRVGAILAKIDWSEKDVSAFLGTYLSEPKPSVVFDPPEKPLNQARFFKRASKEGVRLD
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEC
RKTVLLYDTRSYYLNGEESRLSGVKKWVIELADNRYMSAKRFVTLSQQSSVTALLHEWYR
CEEEEEEECCEEEECCCHHHHHHHHHHHHHHHCCCEECHHHEEEECCCCHHHHHHHHHHH
AGWIQTGELR
HCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]