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The map label for this gene is ydhO [H]

Identifier: 186476137

GI number: 186476137

Start: 1548464

End: 1549135

Strand: Reverse

Name: ydhO [H]

Synonym: Bphy_1379

Alternate gene names: 186476137

Gene position: 1549135-1548464 (Counterclockwise)

Preceding gene: 186476138

Following gene: 186476135

Centisome position: 44.53

GC content: 61.46

Gene sequence:

>672_bases
ATGCAGCACCGAAATCTCACCCAGGCTTGCACGCGCGTCGTCGCCGGGATGTTCATTGGCGTACTGATGGCCGCAGCTCC
CGGCGTTTTCGCCGATGAAGTAAGCAGCTTTAACCAGAATGCCTCATTTTCGACCTCTTCCGGGTCGAATTCAGTGTCCT
CCGTCACACAGAATACGCCAAGCGCCACCTCGAATTCCGAGAGTGGCGCGCGTTCGTTTCTGTCCGGCATGGCCGGAAAG
GCGGGTGACGTTGTGGTCGGCGCCCTCAACATGATCGGCGTGCGCTACCGTTGGGGCGGCGACACCCCGGACTCCGGCCT
TGATTGCAGCGGCTTCGTTCGCTACGTGTTCCAGGACACGCTGGGCATGGCGCTGCCGCGCCGCGCGGAAGAAATGAGCC
GTGTCGGCGAGAAGGTTCGGGTTTCCGACCTGAAGCCGGGAGATCTCGTGTTCTTCAATACGATGCGCCGAACGTTCTCG
CACGTCGGCATCTACATCGGCGACAACAAGTTCGTGCATTCGCCGTCGACGGGCAGCACGATCCGCGTCGACGACATGGA
TGACGGCTACTGGGAAAAACGCTTCACGGGCGCACGCCGCATCGAGAGCACGGTGCCGCAGCAGCAGGAACTGCGTCAGC
GTGTAAGCGCGACGATCGGTGGCAGCAACTAA

Upstream 100 bases:

>100_bases
TACTGGCTAGTATCGACCAAACTTTTTTTCGTAGCCTGTTGATTTACAGGCAAAAACTACCGCGGATTCCCCGCGATAAC
CAAGACCAACCACCAGACCA

Downstream 100 bases:

>100_bases
GACGATCGTCTAACTGCCCGTTTCAAGCAAAAGGCCCGCTTCGTTCGAAGCGGGCCTTTTACGTACTGCTTTCTGAGTTT
GCGCGTCAGACGGCCGCGGT

Product: NLP/P60 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MQHRNLTQACTRVVAGMFIGVLMAAAPGVFADEVSSFNQNASFSTSSGSNSVSSVTQNTPSATSNSESGARSFLSGMAGK
AGDVVVGALNMIGVRYRWGGDTPDSGLDCSGFVRYVFQDTLGMALPRRAEEMSRVGEKVRVSDLKPGDLVFFNTMRRTFS
HVGIYIGDNKFVHSPSTGSTIRVDDMDDGYWEKRFTGARRIESTVPQQQELRQRVSATIGGSN

Sequences:

>Translated_223_residues
MQHRNLTQACTRVVAGMFIGVLMAAAPGVFADEVSSFNQNASFSTSSGSNSVSSVTQNTPSATSNSESGARSFLSGMAGK
AGDVVVGALNMIGVRYRWGGDTPDSGLDCSGFVRYVFQDTLGMALPRRAEEMSRVGEKVRVSDLKPGDLVFFNTMRRTFS
HVGIYIGDNKFVHSPSTGSTIRVDDMDDGYWEKRFTGARRIESTVPQQQELRQRVSATIGGSN
>Mature_223_residues
MQHRNLTQACTRVVAGMFIGVLMAAAPGVFADEVSSFNQNASFSTSSGSNSVSSVTQNTPSATSNSESGARSFLSGMAGK
AGDVVVGALNMIGVRYRWGGDTPDSGLDCSGFVRYVFQDTLGMALPRRAEEMSRVGEKVRVSDLKPGDLVFFNTMRRTFS
HVGIYIGDNKFVHSPSTGSTIRVDDMDDGYWEKRFTGARRIESTVPQQQELRQRVSATIGGSN

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=126, Percent_Identity=44.4444444444444, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1786421, Length=119, Percent_Identity=44.5378151260504, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788501, Length=111, Percent_Identity=48.6486486486487, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1788001, Length=110, Percent_Identity=40.9090909090909, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 24042; Mature: 24042

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHRNLTQACTRVVAGMFIGVLMAAAPGVFADEVSSFNQNASFSTSSGSNSVSSVTQNTP
CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCC
SATSNSESGARSFLSGMAGKAGDVVVGALNMIGVRYRWGGDTPDSGLDCSGFVRYVFQDT
CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHH
LGMALPRRAEEMSRVGEKVRVSDLKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSPSTGST
HHHHCCHHHHHHHHHCCCEEECCCCCCCEEHHHHHHHHHHHCCEEECCCEEEECCCCCCE
IRVDDMDDGYWEKRFTGARRIESTVPQQQELRQRVSATIGGSN
EEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQHRNLTQACTRVVAGMFIGVLMAAAPGVFADEVSSFNQNASFSTSSGSNSVSSVTQNTP
CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCC
SATSNSESGARSFLSGMAGKAGDVVVGALNMIGVRYRWGGDTPDSGLDCSGFVRYVFQDT
CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHH
LGMALPRRAEEMSRVGEKVRVSDLKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSPSTGST
HHHHCCHHHHHHHHHCCCEEECCCCCCCEEHHHHHHHHHHHCCEEECCCEEEECCCCCCE
IRVDDMDDGYWEKRFTGARRIESTVPQQQELRQRVSATIGGSN
EEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]