| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is gltX
Identifier: 186476135
GI number: 186476135
Start: 1545637
End: 1547046
Strand: Reverse
Name: gltX
Synonym: Bphy_1377
Alternate gene names: 186476135
Gene position: 1547046-1545637 (Counterclockwise)
Preceding gene: 186476137
Following gene: 186476134
Centisome position: 44.47
GC content: 63.05
Gene sequence:
>1410_bases ATGACCACTCCCGTTCGCACCCGCTTCGCACCGAGCCCCACCGGCTTCATTCACCTCGGCAACATTCGCTCTGCGCTGTA TCCGTGGGCGTTTGCGCGCAAATCGAAAGGCGTGTTCGTGCTGCGTATCGAGGACACGGACGTCGAGCGGTCGACCGAGC AGTCCGTCGATGCGATTCTCGAAGGCATGCAATGGCTCGGCCTCGATTACGACGAAGGCCCGTTCTACCAGATGCAGCGC ATGGACCGTTATCGCGAAGTGCTCAAGCACATGCAGGAGCAGGGGCTCGTGTACCCGTGCTACATGTCGACGGAAGAACT CGACGCACTGCGCGAGCGCCAGCGCGCCTCTGGCGAGAAGCCGCGTTACGACGGCACGTGGCGTCCCGAGCCGGGCAAGG TGCTGCCGACGCCGCCAGCGGGCGTCCAGCCAGTGTTGCGTTTCCGTAACCCGTTGACGGGCGTCGTCGCGTGGGACGAT GCCGTGAAGGGCCGCGTCGAAATCTCGAACGAAGAACTCGACGATCTTGTGATCGCACGTCCGGACGGCACACCGACGTA CAACTTCTGCGTGGTCGTCGACGACCTCGACATGAAGATCACGCACGTGATTCGCGGCGACGACCACGTGAACAATACGC CGCGCCAGATCAACATCCTGCGTGCGCTCGGCGGCGAACCGCCCGTCTACGCACACCTGCCGACAGTGCTGAACGAGCAG GGCGAGAAGATGAGCAAGCGTCATGGCGCGATGAGTGTGATGGGCTATCGCGACGCAGGCTATCTGCCCGAGGCCGTGCT GAACTATCTGGCGCGACTGGGCTGGTCGCATGGCGACGCGGAAATCTTCTCGCGCGAGCAGCTGATCGAGTGGTTCGATC TCGAACATCTGGGCAAGTCGCCCGCGCAGTACGACCACAACAAGCTCAACTGGCTGAACAACCACTACATCAAGGAAGCG GACAATGCGCGTCTCGCAGATCTGAGCAAGCCGTTCTTCGCGGCGCTCGGCATCGACGAGCCGACGCTCGCGAAGGGTGC GGATCTCGTTAGCGTGATTGCGCTAATGAAGGATCGCGCGTCGACGGTGAAGGAGGTCGTCGACAACGCAGCCATGTTCT ATCGCGAGCCGAATCCGGATGCGGATGCGCTCGCACAACATGTGACGGACGCGGTGCGCCCGGCGCTCGCCGATCTCGCC GCTGCATTGAAGGCGTGCGAGTGGACGAAGGAGGGCATCGCCGCCGCATTGAAGGCAACGCTTGGCGCGCACAAGCTGAA GATGCCGCAGCTCGCGATGCCCGTGCGTGTGCTGGTGGCGGGCACGACGCACACGCCGTCCATCGACAGCGTGCTGATGC TGTTCGGTCGCGACGTGGTGGTAAGCCGCATCGAAAAGGCGGTGGTCTGA
Upstream 100 bases:
>100_bases CGCCGGCTGCTGTTGCCGTCGCCTGAAGCGAACCGTTTTCGTTGCCGCGCCCGGCATCGCTGTCCGCCGGCGCGGGCCGT CCGTCTTCGAGTTACCGCAC
Downstream 100 bases:
>100_bases TTCGCGTTTCACGCGACAGCGAGCAGGCGAAGCGAGGCCGCGGAGGACGATTGCGCGGCCTCGCAAAAAAATTGTAGAAA GCTGCTCAAGAGGTATTTAC
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS
Number of amino acids: Translated: 469; Mature: 468
Protein sequence:
>469_residues MTTPVRTRFAPSPTGFIHLGNIRSALYPWAFARKSKGVFVLRIEDTDVERSTEQSVDAILEGMQWLGLDYDEGPFYQMQR MDRYREVLKHMQEQGLVYPCYMSTEELDALRERQRASGEKPRYDGTWRPEPGKVLPTPPAGVQPVLRFRNPLTGVVAWDD AVKGRVEISNEELDDLVIARPDGTPTYNFCVVVDDLDMKITHVIRGDDHVNNTPRQINILRALGGEPPVYAHLPTVLNEQ GEKMSKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFSREQLIEWFDLEHLGKSPAQYDHNKLNWLNNHYIKEA DNARLADLSKPFFAALGIDEPTLAKGADLVSVIALMKDRASTVKEVVDNAAMFYREPNPDADALAQHVTDAVRPALADLA AALKACEWTKEGIAAALKATLGAHKLKMPQLAMPVRVLVAGTTHTPSIDSVLMLFGRDVVVSRIEKAVV
Sequences:
>Translated_469_residues MTTPVRTRFAPSPTGFIHLGNIRSALYPWAFARKSKGVFVLRIEDTDVERSTEQSVDAILEGMQWLGLDYDEGPFYQMQR MDRYREVLKHMQEQGLVYPCYMSTEELDALRERQRASGEKPRYDGTWRPEPGKVLPTPPAGVQPVLRFRNPLTGVVAWDD AVKGRVEISNEELDDLVIARPDGTPTYNFCVVVDDLDMKITHVIRGDDHVNNTPRQINILRALGGEPPVYAHLPTVLNEQ GEKMSKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFSREQLIEWFDLEHLGKSPAQYDHNKLNWLNNHYIKEA DNARLADLSKPFFAALGIDEPTLAKGADLVSVIALMKDRASTVKEVVDNAAMFYREPNPDADALAQHVTDAVRPALADLA AALKACEWTKEGIAAALKATLGAHKLKMPQLAMPVRVLVAGTTHTPSIDSVLMLFGRDVVVSRIEKAVV >Mature_468_residues TTPVRTRFAPSPTGFIHLGNIRSALYPWAFARKSKGVFVLRIEDTDVERSTEQSVDAILEGMQWLGLDYDEGPFYQMQRM DRYREVLKHMQEQGLVYPCYMSTEELDALRERQRASGEKPRYDGTWRPEPGKVLPTPPAGVQPVLRFRNPLTGVVAWDDA VKGRVEISNEELDDLVIARPDGTPTYNFCVVVDDLDMKITHVIRGDDHVNNTPRQINILRALGGEPPVYAHLPTVLNEQG EKMSKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFSREQLIEWFDLEHLGKSPAQYDHNKLNWLNNHYIKEAD NARLADLSKPFFAALGIDEPTLAKGADLVSVIALMKDRASTVKEVVDNAAMFYREPNPDADALAQHVTDAVRPALADLAA ALKACEWTKEGIAAALKATLGAHKLKMPQLAMPVRVLVAGTTHTPSIDSVLMLFGRDVVVSRIEKAVV
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI134288884, Length=506, Percent_Identity=29.6442687747036, Blast_Score=201, Evalue=1e-51, Organism=Escherichia coli, GI1788743, Length=466, Percent_Identity=48.9270386266094, Blast_Score=460, Evalue=1e-131, Organism=Escherichia coli, GI226510925, Length=285, Percent_Identity=34.3859649122807, Blast_Score=139, Evalue=5e-34, Organism=Caenorhabditis elegans, GI71993394, Length=482, Percent_Identity=28.8381742738589, Blast_Score=183, Evalue=2e-46, Organism=Saccharomyces cerevisiae, GI6324540, Length=422, Percent_Identity=32.9383886255924, Blast_Score=214, Evalue=3e-56, Organism=Drosophila melanogaster, GI24665321, Length=500, Percent_Identity=28, Blast_Score=207, Evalue=8e-54,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYE_BURP8 (B2JIQ8)
Other databases:
- EMBL: CP001043 - RefSeq: YP_001857605.1 - GeneID: 6244651 - GenomeReviews: CP001043_GR - KEGG: bph:Bphy_1377 - HOGENOM: HBG628189 - OMA: DEASWTK - ProtClustDB: PRK01406 - GO: GO:0005737 - HAMAP: MF_00022_B - InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 - Gene3D: G3DSA:1.10.1160.10 - Gene3D: G3DSA:3.40.50.620 - Gene3D: G3DSA:1.10.10.350 - PANTHER: PTHR10119 - PRINTS: PR00987 - TIGRFAMs: TIGR00464
Pfam domain/function: PF00749 tRNA-synt_1c; SSF48163 tRNA-synt_bind
EC number: =6.1.1.17
Molecular weight: Translated: 52377; Mature: 52246
Theoretical pI: Translated: 6.07; Mature: 6.07
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: BINDING 246-246
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPVRTRFAPSPTGFIHLGNIRSALYPWAFARKSKGVFVLRIEDTDVERSTEQSVDAIL CCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHH EGMQWLGLDYDEGPFYQMQRMDRYREVLKHMQEQGLVYPCYMSTEELDALRERQRASGEK HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCC PRYDGTWRPEPGKVLPTPPAGVQPVLRFRNPLTGVVAWDDAVKGRVEISNEELDDLVIAR CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCCEEEEC PDGTPTYNFCVVVDDLDMKITHVIRGDDHVNNTPRQINILRALGGEPPVYAHLPTVLNEQ CCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECHHHHHHH GEKMSKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFSREQLIEWFDLEHLGKS HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC PAQYDHNKLNWLNNHYIKEADNARLADLSKPFFAALGIDEPTLAKGADLVSVIALMKDRA CCCCCCCHHHHHHCCCCCCCCCCCHHHCCCCHHEEECCCCCCHHCCHHHHHHHHHHHHHH STVKEVVDNAAMFYREPNPDADALAQHVTDAVRPALADLAAALKACEWTKEGIAAALKAT HHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGAHKLKMPQLAMPVRVLVAGTTHTPSIDSVLMLFGRDVVVSRIEKAVV HHHHHCCCCHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TTPVRTRFAPSPTGFIHLGNIRSALYPWAFARKSKGVFVLRIEDTDVERSTEQSVDAIL CCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHH EGMQWLGLDYDEGPFYQMQRMDRYREVLKHMQEQGLVYPCYMSTEELDALRERQRASGEK HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCC PRYDGTWRPEPGKVLPTPPAGVQPVLRFRNPLTGVVAWDDAVKGRVEISNEELDDLVIAR CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCCEEEEC PDGTPTYNFCVVVDDLDMKITHVIRGDDHVNNTPRQINILRALGGEPPVYAHLPTVLNEQ CCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECHHHHHHH GEKMSKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFSREQLIEWFDLEHLGKS HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC PAQYDHNKLNWLNNHYIKEADNARLADLSKPFFAALGIDEPTLAKGADLVSVIALMKDRA CCCCCCCHHHHHHCCCCCCCCCCCHHHCCCCHHEEECCCCCCHHCCHHHHHHHHHHHHHH STVKEVVDNAAMFYREPNPDADALAQHVTDAVRPALADLAAALKACEWTKEGIAAALKAT HHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGAHKLKMPQLAMPVRVLVAGTTHTPSIDSVLMLFGRDVVVSRIEKAVV HHHHHCCCCHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA