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The map label for this gene is skp [H]

Identifier: 186476087

GI number: 186476087

Start: 1487737

End: 1488273

Strand: Reverse

Name: skp [H]

Synonym: Bphy_1329

Alternate gene names: 186476087

Gene position: 1488273-1487737 (Counterclockwise)

Preceding gene: 186476088

Following gene: 186476086

Centisome position: 42.78

GC content: 62.57

Gene sequence:

>537_bases
ATGACTTTGCTAACTGGTATGTTTTCGAAACGTGCGGCGTGTGCGATGGCGCTGGCCATGACGCTCGGCGTGGGCGCCGC
CAACGCGGCGCAGGCGCAGGAAGCGCGAATCGCGGCGGTGAATTCGGATCGCATCCTGCGTGAGTCGACGTTGGCGAAAG
CGGCGCAGACCAAGCTCGAAGCGGAGTTCGCGAAGCGCGACAAGGATCTGCAGGACATGGCGCAGCGTCTGAAGTCGATG
TCCGATTCGCTCGACAAGAACGGCGCGTCGCTGGCGCCCGCCGACCGCGCGCAGAAGCAGCGCGATCTGTCGCAACTCGA
CACGGACTTCCAGCGCAAGCAGCGCGAATTCCGTGAAGACCTGAACCAGCGCCGTAACGAAGAACTGGCGTCCGTGCTCG
ATCGCGCGAACAAGGTGATCAAGCAGATCGCCGAGCAGCAGCACTACGATCTGATCGTGCAGGAAGCGGTTTACGTCAGC
CCGCGTATCGACATCACCGATCAGGTGCTCAAGGCGCTGGCGTCGAGCGGCAACTGA

Upstream 100 bases:

>100_bases
AGAAACACACGGGTGACCAGTATCAGAAGTTCCAGTTCCAGATCGGTACCGCGTTCTGATCTCGCGCACCGGAACTGGAA
CCCTTTACAGCATCGAGAGG

Downstream 100 bases:

>100_bases
AGCCGGGCCGGACGGCGCCTGCATCGGCCGTCTGGTGCAACACCTCCGGCGCGCGACATCCGCGGCGCTTGGGTAACTGA
ACAGCAGGAGCAGTAGACGC

Product: outer membrane chaperone Skp

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MTLLTGMFSKRAACAMALAMTLGVGAANAAQAQEARIAAVNSDRILRESTLAKAAQTKLEAEFAKRDKDLQDMAQRLKSM
SDSLDKNGASLAPADRAQKQRDLSQLDTDFQRKQREFREDLNQRRNEELASVLDRANKVIKQIAEQQHYDLIVQEAVYVS
PRIDITDQVLKALASSGN

Sequences:

>Translated_178_residues
MTLLTGMFSKRAACAMALAMTLGVGAANAAQAQEARIAAVNSDRILRESTLAKAAQTKLEAEFAKRDKDLQDMAQRLKSM
SDSLDKNGASLAPADRAQKQRDLSQLDTDFQRKQREFREDLNQRRNEELASVLDRANKVIKQIAEQQHYDLIVQEAVYVS
PRIDITDQVLKALASSGN
>Mature_177_residues
TLLTGMFSKRAACAMALAMTLGVGAANAAQAQEARIAAVNSDRILRESTLAKAAQTKLEAEFAKRDKDLQDMAQRLKSMS
DSLDKNGASLAPADRAQKQRDLSQLDTDFQRKQREFREDLNQRRNEELASVLDRANKVIKQIAEQQHYDLIVQEAVYVSP
RIDITDQVLKALASSGN

Specific function: Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm [H]

COG id: COG2825

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the skp family [H]

Homologues:

None

Paralogues:

None

Copy number: 580 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005632 [H]

Pfam domain/function: PF03938 OmpH [H]

EC number: NA

Molecular weight: Translated: 19737; Mature: 19605

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLLTGMFSKRAACAMALAMTLGVGAANAAQAQEARIAAVNSDRILRESTLAKAAQTKLE
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
AEFAKRDKDLQDMAQRLKSMSDSLDKNGASLAPADRAQKQRDLSQLDTDFQRKQREFRED
HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNQRRNEELASVLDRANKVIKQIAEQQHYDLIVQEAVYVSPRIDITDQVLKALASSGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
TLLTGMFSKRAACAMALAMTLGVGAANAAQAQEARIAAVNSDRILRESTLAKAAQTKLE
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
AEFAKRDKDLQDMAQRLKSMSDSLDKNGASLAPADRAQKQRDLSQLDTDFQRKQREFRED
HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNQRRNEELASVLDRANKVIKQIAEQQHYDLIVQEAVYVSPRIDITDQVLKALASSGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA