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The map label for this gene is rnhB [H]

Identifier: 186476082

GI number: 186476082

Start: 1483053

End: 1483802

Strand: Reverse

Name: rnhB [H]

Synonym: Bphy_1324

Alternate gene names: 186476082

Gene position: 1483802-1483053 (Counterclockwise)

Preceding gene: 186476083

Following gene: 186476081

Centisome position: 42.65

GC content: 67.2

Gene sequence:

>750_bases
ATGAACCGCGCGGCGGGCACGGCCGCGCCGCGCCGCAAGACAGCTGCGAAGGCGTCCGCGCAGGTCGGCCTCGATTTCTC
GTCGCCGGACGACGTGGTTTGCGGTGTCGACGAAGCGGGGCGCGGCCCGCTCGCCGGACCCGTGGTCGCGGCCGCCGTGA
TTCTCGATCCGGCGAAGCCGCGCATTCGCGGTCTCACCGATTCGAAGGTGCTGACGGCGAAAAAGCGCGACGAACTGTAC
GAGAAGATCATCGAGCGCGCGCTGGCGTATTGCGTTGCGTCGGCATCGGTCGAAGAAATCGACTCGCTGAACATCCTGCA
CGCGACGATGCTCGCGATGAAGCGCGCGGTCGAAGGCCTGCGGGTCACGCCGACGCTCGCGAAGATCGACGGTAACCGCT
GTCCCTCGTTGAGCATTCGCAGCGAGGCGATCGTCAGCGGCGATCTGCTCGTACCGTGCATCTCGGCCGCGTCGATTCTC
GCCAAGGTCACGCGCGACCGGATGCTGCTGGAACTGCATCGGATGTTCCCGGTTTATGGTTTCGACGCGCACGCGGGCTA
CGGCACGCCGCAGCATCTCACAGCGTTGCGCGAGCATGGTCCATGCGAGCATCACCGGCGCTCGTTCGCGCCCGTGCGCG
ACGCGCATCTACGTCTCGGCACGGCTGTGGACCTGCCGGAAGGCGTCGTGGTCGTGCCGCCCGTCGCGCTCGACGACGCG
TTTCTCGCCGACGACAGCGCGCCGTTCTAA

Upstream 100 bases:

>100_bases
CGGAAATCTTCACTGAGATGCATCACGTGCTCAAGCAGAACACAGCGCAGCGCGCGGCCGAAGCCGTCGTCGGCGTGATC
GAAGCGCGTCGGGGGCGTCC

Downstream 100 bases:

>100_bases
GCGGGCACCAACCCATCAAGCGCCTCCGGCGCTTTTCTTTTCACCGTTTTTTTCTCGCTCGTCGCCTGTGAAAGCCATCA
CCTCGCGGGACAATCCGCTC

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MNRAAGTAAPRRKTAAKASAQVGLDFSSPDDVVCGVDEAGRGPLAGPVVAAAVILDPAKPRIRGLTDSKVLTAKKRDELY
EKIIERALAYCVASASVEEIDSLNILHATMLAMKRAVEGLRVTPTLAKIDGNRCPSLSIRSEAIVSGDLLVPCISAASIL
AKVTRDRMLLELHRMFPVYGFDAHAGYGTPQHLTALREHGPCEHHRRSFAPVRDAHLRLGTAVDLPEGVVVVPPVALDDA
FLADDSAPF

Sequences:

>Translated_249_residues
MNRAAGTAAPRRKTAAKASAQVGLDFSSPDDVVCGVDEAGRGPLAGPVVAAAVILDPAKPRIRGLTDSKVLTAKKRDELY
EKIIERALAYCVASASVEEIDSLNILHATMLAMKRAVEGLRVTPTLAKIDGNRCPSLSIRSEAIVSGDLLVPCISAASIL
AKVTRDRMLLELHRMFPVYGFDAHAGYGTPQHLTALREHGPCEHHRRSFAPVRDAHLRLGTAVDLPEGVVVVPPVALDDA
FLADDSAPF
>Mature_249_residues
MNRAAGTAAPRRKTAAKASAQVGLDFSSPDDVVCGVDEAGRGPLAGPVVAAAVILDPAKPRIRGLTDSKVLTAKKRDELY
EKIIERALAYCVASASVEEIDSLNILHATMLAMKRAVEGLRVTPTLAKIDGNRCPSLSIRSEAIVSGDLLVPCISAASIL
AKVTRDRMLLELHRMFPVYGFDAHAGYGTPQHLTALREHGPCEHHRRSFAPVRDAHLRLGTAVDLPEGVVVVPPVALDDA
FLADDSAPF

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=193, Percent_Identity=59.0673575129534, Blast_Score=213, Evalue=8e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 26527; Mature: 26527

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRAAGTAAPRRKTAAKASAQVGLDFSSPDDVVCGVDEAGRGPLAGPVVAAAVILDPAKP
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCH
RIRGLTDSKVLTAKKRDELYEKIIERALAYCVASASVEEIDSLNILHATMLAMKRAVEGL
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
RVTPTLAKIDGNRCPSLSIRSEAIVSGDLLVPCISAASILAKVTRDRMLLELHRMFPVYG
CCCCCCEECCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
FDAHAGYGTPQHLTALREHGPCEHHRRSFAPVRDAHLRLGTAVDLPEGVVVVPPVALDDA
CCCCCCCCCHHHHHHHHHCCCHHHHHHCCCCHHHHHHEECCEECCCCCEEEECCCCCCCC
FLADDSAPF
CCCCCCCCC
>Mature Secondary Structure
MNRAAGTAAPRRKTAAKASAQVGLDFSSPDDVVCGVDEAGRGPLAGPVVAAAVILDPAKP
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCH
RIRGLTDSKVLTAKKRDELYEKIIERALAYCVASASVEEIDSLNILHATMLAMKRAVEGL
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
RVTPTLAKIDGNRCPSLSIRSEAIVSGDLLVPCISAASILAKVTRDRMLLELHRMFPVYG
CCCCCCEECCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
FDAHAGYGTPQHLTALREHGPCEHHRRSFAPVRDAHLRLGTAVDLPEGVVVVPPVALDDA
CCCCCCCCCHHHHHHHHHCCCHHHHHHCCCCHHHHHHEECCEECCCCCEEEECCCCCCCC
FLADDSAPF
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA