| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186475880
Identifier: 186475880
GI number: 186475880
Start: 1261963
End: 1263702
Strand: Direct
Name: 186475880
Synonym: Bphy_1115
Alternate gene names: NA
Gene position: 1261963-1263702 (Clockwise)
Preceding gene: 186475879
Following gene: 186475883
Centisome position: 36.27
GC content: 64.25
Gene sequence:
>1740_bases GTGACCCTACCGTTCAGACGCAGGCCGAGGAAGCGGCGCACCCGTTCGACGAACGTCAGCACACGGCATGGCGCGAACCG CATTCGAGCCGCGCAACGCGAGGTTCGCGGAGTCGACTCGGCGATGCAGCGAGCGCGCATCTATCGCCACCCCGCTGGTT CGATCGTCAGAATAGAAACGCATATCTCGATCGTCTATCTCGCGGGCCGCTTCGCTTACAAGATCATCAAGCCTGTCGCT CCGGGATTCGCGGATTTCACGGCGGCCGACACGCGGCGGCACTGCTGCGAAGCCCAGGTACGTCTGAACAGACCGCTTGC GCGGGGGCTTTATCTCGGCGTGCTTCCGATCAGGCGCCGCGGACGTTCGCTCATGCTCGAATCGAAGGGCCATACGGTCG AATACGCGGTCAAGATGCGTCGCTTCGACGAATCCGGCCTCTTTTCCAGTCTCGCCCGACGGGGAGCGCTGTCGCCGCGC GATATCGACCGTGCGACACAAAGACTTGCTGCCTGGCACGTACACGCGCCGCGAGACGCGCCTCTCGCACGGTACGGCGG CGCCGCATTGCTCAGAGCACAGGTCGACGCCGTCAATGCATCCCTTCAGGCGAGGTGCAATGCGCCGGCTCTGCGTGATA TCGGCGCCTGGTGCGCCCAGCAGCTCGCGCAGCTCGCGGACGCAATAGACAGGCGCCGTGTCGACGGCTTCGTACGTGCC TGTCATGGCGACCTGCACCTCGACAACGTGATGCGCTGGCGCGGCGAGGTATCGATGTTCGACTGCATAGACTTCGACGA CGCGCTGCGCTGGATCGATATGGCCAACGACATCGCGTTCCTCGTCATGGATCTGAGGGCGCGGGCAGGAACCCGCCTGT CGAACCGGCTGCTGAACGGGTGGCTCGAGGCAACGGGCGACTACGCCGCACTCGAGCTGATGCCGCTCTATGTCGTGTAT CGCGCGCTGGTTCGAGCGCTCGTGGCCTTTTTGTACAGTAAAAGCGCCTCGCACACGAAAGCCGCCGCAGCAGCGCGCGA CGCCGCACGCTACCTGGAGATTGCCGCGGGCGAGACGCGAAAGCCGCCGCCCGTCCTGCTGCTGTGTCATGGCTTTTCGG GATCGGGAAAATCCGTCGCCAGCCGCGCGCTGGCCGAGCTGAGCGGCGCGATATGTTTGTCCAGCGACGTCGAACGTAAG CGCCTGGCGTCCACTCCCGCGGCACATGCCCGGCTCGACGGGGCGCACTATACGCGGGAGGCGCGACATGCCGTCTACGG CCACTTGCTTCGCCTCGCCTCTTCGGTTGTACAGGCTGGCTACAGTGTCATCGTGGACGCGACGTTCCTTGAGCACGCCC ATCGCCGCGACTTTTTCACGCTGGCGGAACGCCTTCGCGTAGAGGCTCGCGTGCTGGATTTTCACGCCGCTCCTCACATC CTGGCGGAGCGCGTCGTCACACGTCAACGCGACCGTCGCGACGCCTCCGACGCCGACACGTCCACGCTGTCACTGCAACT CAACACGGCCGAGCCGCTGACATCCGACGAAATGGCGCGGACCCTCGCCTTCGATACCATCGTTCCCGTCGAGGCCTTCG ACGGCCCAGACTTCTGGAAACGGGTACTTGATCTGATGTCTTCGCCTGTCGCCGAACCCGCGCCCGATATCTGCCGCATC AGGTGCAAAAGCGAAAATAGCCGCTATGCAGCAGAACAGGATTCCCGCCCAACTCGTTGA
Upstream 100 bases:
>100_bases ATCCGGCGCTGTGCAGCTTCTGGCGGGACGTCGAGGACGCGGCGTCGAGCATGCCCGTCAGGCAGGATAAAGACAGGCCG ACCCGTCGCAGGAGGCACGC
Downstream 100 bases:
>100_bases GCATCCGCCGGGCGGCAACCTCGATGTCCGGACGATGTTCAGTGAACGCGTCGCACAGGTCTTCTTCTCGCAGCGAGCGC GCACCGAAATGGTCTTCGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 579; Mature: 578
Protein sequence:
>579_residues MTLPFRRRPRKRRTRSTNVSTRHGANRIRAAQREVRGVDSAMQRARIYRHPAGSIVRIETHISIVYLAGRFAYKIIKPVA PGFADFTAADTRRHCCEAQVRLNRPLARGLYLGVLPIRRRGRSLMLESKGHTVEYAVKMRRFDESGLFSSLARRGALSPR DIDRATQRLAAWHVHAPRDAPLARYGGAALLRAQVDAVNASLQARCNAPALRDIGAWCAQQLAQLADAIDRRRVDGFVRA CHGDLHLDNVMRWRGEVSMFDCIDFDDALRWIDMANDIAFLVMDLRARAGTRLSNRLLNGWLEATGDYAALELMPLYVVY RALVRALVAFLYSKSASHTKAAAAARDAARYLEIAAGETRKPPPVLLLCHGFSGSGKSVASRALAELSGAICLSSDVERK RLASTPAAHARLDGAHYTREARHAVYGHLLRLASSVVQAGYSVIVDATFLEHAHRRDFFTLAERLRVEARVLDFHAAPHI LAERVVTRQRDRRDASDADTSTLSLQLNTAEPLTSDEMARTLAFDTIVPVEAFDGPDFWKRVLDLMSSPVAEPAPDICRI RCKSENSRYAAEQDSRPTR
Sequences:
>Translated_579_residues MTLPFRRRPRKRRTRSTNVSTRHGANRIRAAQREVRGVDSAMQRARIYRHPAGSIVRIETHISIVYLAGRFAYKIIKPVA PGFADFTAADTRRHCCEAQVRLNRPLARGLYLGVLPIRRRGRSLMLESKGHTVEYAVKMRRFDESGLFSSLARRGALSPR DIDRATQRLAAWHVHAPRDAPLARYGGAALLRAQVDAVNASLQARCNAPALRDIGAWCAQQLAQLADAIDRRRVDGFVRA CHGDLHLDNVMRWRGEVSMFDCIDFDDALRWIDMANDIAFLVMDLRARAGTRLSNRLLNGWLEATGDYAALELMPLYVVY RALVRALVAFLYSKSASHTKAAAAARDAARYLEIAAGETRKPPPVLLLCHGFSGSGKSVASRALAELSGAICLSSDVERK RLASTPAAHARLDGAHYTREARHAVYGHLLRLASSVVQAGYSVIVDATFLEHAHRRDFFTLAERLRVEARVLDFHAAPHI LAERVVTRQRDRRDASDADTSTLSLQLNTAEPLTSDEMARTLAFDTIVPVEAFDGPDFWKRVLDLMSSPVAEPAPDICRI RCKSENSRYAAEQDSRPTR >Mature_578_residues TLPFRRRPRKRRTRSTNVSTRHGANRIRAAQREVRGVDSAMQRARIYRHPAGSIVRIETHISIVYLAGRFAYKIIKPVAP GFADFTAADTRRHCCEAQVRLNRPLARGLYLGVLPIRRRGRSLMLESKGHTVEYAVKMRRFDESGLFSSLARRGALSPRD IDRATQRLAAWHVHAPRDAPLARYGGAALLRAQVDAVNASLQARCNAPALRDIGAWCAQQLAQLADAIDRRRVDGFVRAC HGDLHLDNVMRWRGEVSMFDCIDFDDALRWIDMANDIAFLVMDLRARAGTRLSNRLLNGWLEATGDYAALELMPLYVVYR ALVRALVAFLYSKSASHTKAAAAARDAARYLEIAAGETRKPPPVLLLCHGFSGSGKSVASRALAELSGAICLSSDVERKR LASTPAAHARLDGAHYTREARHAVYGHLLRLASSVVQAGYSVIVDATFLEHAHRRDFFTLAERLRVEARVLDFHAAPHIL AERVVTRQRDRRDASDADTSTLSLQLNTAEPLTSDEMARTLAFDTIVPVEAFDGPDFWKRVLDLMSSPVAEPAPDICRIR CKSENSRYAAEQDSRPTR
Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]
COG id: COG2187
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR010488 [H]
Pfam domain/function: PF06414 Zeta_toxin [H]
EC number: NA
Molecular weight: Translated: 64612; Mature: 64480
Theoretical pI: Translated: 10.54; Mature: 10.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLPFRRRPRKRRTRSTNVSTRHGANRIRAAQREVRGVDSAMQRARIYRHPAGSIVRIET CCCCCCCCCHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE HISIVYLAGRFAYKIIKPVAPGFADFTAADTRRHCCEAQVRLNRPLARGLYLGVLPIRRR EEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHC GRSLMLESKGHTVEYAVKMRRFDESGLFSSLARRGALSPRDIDRATQRLAAWHVHAPRDA CCEEEEECCCCEEHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC PLARYGGAALLRAQVDAVNASLQARCNAPALRDIGAWCAQQLAQLADAIDRRRVDGFVRA CHHHHCCHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CHGDLHLDNVMRWRGEVSMFDCIDFDDALRWIDMANDIAFLVMDLRARAGTRLSNRLLNG HCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH WLEATGDYAALELMPLYVVYRALVRALVAFLYSKSASHTKAAAAARDAARYLEIAAGETR HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC KPPPVLLLCHGFSGSGKSVASRALAELSGAICLSSDVERKRLASTPAAHARLDGAHYTRE CCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHCCCHHHHHCCCHHHHHH ARHAVYGHLLRLASSVVQAGYSVIVDATFLEHAHRRDFFTLAERLRVEARVLDFHAAPHI HHHHHHHHHHHHHHHHHHCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH LAERVVTRQRDRRDASDADTSTLSLQLNTAEPLTSDEMARTLAFDTIVPVEAFDGPDFWK HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHH RVLDLMSSPVAEPAPDICRIRCKSENSRYAAEQDSRPTR HHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC >Mature Secondary Structure TLPFRRRPRKRRTRSTNVSTRHGANRIRAAQREVRGVDSAMQRARIYRHPAGSIVRIET CCCCCCCCHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE HISIVYLAGRFAYKIIKPVAPGFADFTAADTRRHCCEAQVRLNRPLARGLYLGVLPIRRR EEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHC GRSLMLESKGHTVEYAVKMRRFDESGLFSSLARRGALSPRDIDRATQRLAAWHVHAPRDA CCEEEEECCCCEEHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC PLARYGGAALLRAQVDAVNASLQARCNAPALRDIGAWCAQQLAQLADAIDRRRVDGFVRA CHHHHCCHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CHGDLHLDNVMRWRGEVSMFDCIDFDDALRWIDMANDIAFLVMDLRARAGTRLSNRLLNG HCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH WLEATGDYAALELMPLYVVYRALVRALVAFLYSKSASHTKAAAAARDAARYLEIAAGETR HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC KPPPVLLLCHGFSGSGKSVASRALAELSGAICLSSDVERKRLASTPAAHARLDGAHYTRE CCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHCCCHHHHHCCCHHHHHH ARHAVYGHLLRLASSVVQAGYSVIVDATFLEHAHRRDFFTLAERLRVEARVLDFHAAPHI HHHHHHHHHHHHHHHHHHCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH LAERVVTRQRDRRDASDADTSTLSLQLNTAEPLTSDEMARTLAFDTIVPVEAFDGPDFWK HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHH RVLDLMSSPVAEPAPDICRIRCKSENSRYAAEQDSRPTR HHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]