| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
Click here to switch to the map view.
The map label for this gene is 186475816
Identifier: 186475816
GI number: 186475816
Start: 1179991
End: 1180578
Strand: Reverse
Name: 186475816
Synonym: Bphy_1051
Alternate gene names: NA
Gene position: 1180578-1179991 (Counterclockwise)
Preceding gene: 186475817
Following gene: 186475806
Centisome position: 33.93
GC content: 64.46
Gene sequence:
>588_bases ATGCAAAGACGAAACTTCATGCTGAAGAGTACCGCCGCGCTCGCTTTCGGAACCCTTGCACTGGCGGGCTGCACCACCAC CAAAAGCAGCGGTGAGTCTGCCGCTACGGACATGTCGAAGCGGCAGTCGATCGATGCCAGCGTCGACGGCACGATGTCCC GTCTCTACACGACCGTCAAAGGTTCGCGCGAACTGGTCGCGAAGTCGCGCGGCATACTCGTTTTCCCGTCCGTGCTGCAA GTCGGCTTCGTCGTCGGCGGCCAGTACGGCGAGGGCGCACTGCGCGTGGGCGGCGCTTCCGTCGGCTACTACAGCACGAT CTCGGGCTCGTTCGGCCTGCAGGCGGGCGCGCAGTCGAAGGCCATCATCTTCTGCTTCATGACGCAGGACGCGCTCGACA AATTCCGCAATTCGGACGGCTGGTCGGTCGGCGCCGACGCATCCGTCGCGCTGGTCAAGCTGGGCGCGAACGGTGTGGTC GATACCACGACGGCGACCGCGCCCGTCCAGGCCTTCATCCTGACGAACGCTGGCCTGATGGCCGATGTGTCGCTGGCGGG CACGAAGGTGTCGAAGCTGAAGGTCTGA
Upstream 100 bases:
>100_bases TGTCCCCAGAACCATTGCAGTGCGGGTTCGTGTGATATAACTCAAGAAGCAACCCGCGTGAACTGAGGCTGCACCCCCGG AACCACGATGGAGAAAAACG
Downstream 100 bases:
>100_bases CGGCAACGCGGCCCACGTGCATCGTCAGTGGGCCGCCTCGGCGCTGTGCTACGGGAGGCGGACGCGAGTCCGCCACGCAG TTCCGGCAGGTCGCCGACGA
Product: putative lipoprotein
Products: NA
Alternate protein names: Twin-Arginine Translocation Pathway Signal
Number of amino acids: Translated: 195; Mature: 195
Protein sequence:
>195_residues MQRRNFMLKSTAALAFGTLALAGCTTTKSSGESAATDMSKRQSIDASVDGTMSRLYTTVKGSRELVAKSRGILVFPSVLQ VGFVVGGQYGEGALRVGGASVGYYSTISGSFGLQAGAQSKAIIFCFMTQDALDKFRNSDGWSVGADASVALVKLGANGVV DTTTATAPVQAFILTNAGLMADVSLAGTKVSKLKV
Sequences:
>Translated_195_residues MQRRNFMLKSTAALAFGTLALAGCTTTKSSGESAATDMSKRQSIDASVDGTMSRLYTTVKGSRELVAKSRGILVFPSVLQ VGFVVGGQYGEGALRVGGASVGYYSTISGSFGLQAGAQSKAIIFCFMTQDALDKFRNSDGWSVGADASVALVKLGANGVV DTTTATAPVQAFILTNAGLMADVSLAGTKVSKLKV >Mature_195_residues MQRRNFMLKSTAALAFGTLALAGCTTTKSSGESAATDMSKRQSIDASVDGTMSRLYTTVKGSRELVAKSRGILVFPSVLQ VGFVVGGQYGEGALRVGGASVGYYSTISGSFGLQAGAQSKAIIFCFMTQDALDKFRNSDGWSVGADASVALVKLGANGVV DTTTATAPVQAFILTNAGLMADVSLAGTKVSKLKV
Specific function: Unknown
COG id: COG2930
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20056; Mature: 20056
Theoretical pI: Translated: 10.14; Mature: 10.14
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRRNFMLKSTAALAFGTLALAGCTTTKSSGESAATDMSKRQSIDASVDGTMSRLYTTVK CCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHC GSRELVAKSRGILVFPSVLQVGFVVGGQYGEGALRVGGASVGYYSTISGSFGLQAGAQSK CCHHHHHHCCCEEEEHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCC AIIFCFMTQDALDKFRNSDGWSVGADASVALVKLGANGVVDTTTATAPVQAFILTNAGLM EEEEEEECHHHHHHHCCCCCCEECCCCEEEEEEECCCCEEECCCCCCCEEEEEEECCCCE ADVSLAGTKVSKLKV EEEEECCCEEEEECC >Mature Secondary Structure MQRRNFMLKSTAALAFGTLALAGCTTTKSSGESAATDMSKRQSIDASVDGTMSRLYTTVK CCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHC GSRELVAKSRGILVFPSVLQVGFVVGGQYGEGALRVGGASVGYYSTISGSFGLQAGAQSK CCHHHHHHCCCEEEEHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCC AIIFCFMTQDALDKFRNSDGWSVGADASVALVKLGANGVVDTTTATAPVQAFILTNAGLM EEEEEEECHHHHHHHCCCCCCEECCCCEEEEEEECCCCEEECCCCCCCEEEEEEECCCCE ADVSLAGTKVSKLKV EEEEECCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA