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The map label for this gene is ycfH [C]

Identifier: 186475810

GI number: 186475810

Start: 1174381

End: 1175172

Strand: Direct

Name: ycfH [C]

Synonym: Bphy_1045

Alternate gene names: 186475810

Gene position: 1174381-1175172 (Clockwise)

Preceding gene: 186475809

Following gene: 186475811

Centisome position: 33.75

GC content: 63.76

Gene sequence:

>792_bases
ATGTTTGTCGATTCCCACTGCCATATCAATTTCGAAGGACTCGGCGACCGTCTGCCGCAAGTGCTCGACAACATGCGCTC
GCACTCGGTGACGCACGCGCTGTGCGTGTCCGTCGATTTCGAAACGCTGCCGTCCGTGCTGGAGATCGCGCGCACGTACG
ACAACGTGTATGCGTCCGTCGGCGTGCATCCCGATCACGAAGACGCGCGCGAGCCGACGGTCGCCGAGCTCGTCGAACTG
GCGCAGCATCCGAAGGTGGTCGCCATCGGCGAAACCGGCCTCGACTACTACCGCCTGGAAGGCCGCTCGATCGAAGATAT
GGAGTGGCAGCGCGAACGCTTTCGCGTGCATATCCGCGCCGCCCACCAGACGGGCAAGCCGTTGATCGTCCATACGCGCG
CGTCGTCGGCAGATACCTTGCGGATCATGGCCGAGGAGCGCGCGAGCGAGTCGGGCGGTGTGATGCATTGCTTCACGGAA
CCGTGGGACGTCGCCGAGCAGGCGCTCGCGCAGAATTTCTACATTTCGTTGTCGGGCATCGTCACGTTCAAGAGCGCAAC
GGAGGTGCAGGACGTCGCGCGCCGCGTGCCGCTCGAACGGCTGCTGATCGAAACCGATTCGCCGTACCTCGCGCCCGTGC
CGTTTCGCGGCAAGCCGAATGAACCTGCGTACGTGAGTTATGTCGGACGCTTCATCGCGCAGCAGCGCGAGATGCCGGAC
GAAGCACTCGCCGCAGCCACGACGGACAACTTCTTCCGGCTGTTCAAGATTCCGGCGCCGAGGGGCGCCTGA

Upstream 100 bases:

>100_bases
TGGTGTTCGAGGAACTGTTTCTCGGCTACCGCGACCTGTTCGCGTAGCGCGCGGTCAGCCCCGTCGTCACCGCTATTGGT
TTTTTAAGCAGGACTTCACC

Downstream 100 bases:

>100_bases
GCGATAAATCCAGTAGCATCAACACGATAGGGAAGTTTCCTAAAGCAAGATATGAAAAAATACACGATCGAGGGCCAACA
CGGCGCAATGTTTTGTCCGG

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MFVDSHCHINFEGLGDRLPQVLDNMRSHSVTHALCVSVDFETLPSVLEIARTYDNVYASVGVHPDHEDAREPTVAELVEL
AQHPKVVAIGETGLDYYRLEGRSIEDMEWQRERFRVHIRAAHQTGKPLIVHTRASSADTLRIMAEERASESGGVMHCFTE
PWDVAEQALAQNFYISLSGIVTFKSATEVQDVARRVPLERLLIETDSPYLAPVPFRGKPNEPAYVSYVGRFIAQQREMPD
EALAAATTDNFFRLFKIPAPRGA

Sequences:

>Translated_263_residues
MFVDSHCHINFEGLGDRLPQVLDNMRSHSVTHALCVSVDFETLPSVLEIARTYDNVYASVGVHPDHEDAREPTVAELVEL
AQHPKVVAIGETGLDYYRLEGRSIEDMEWQRERFRVHIRAAHQTGKPLIVHTRASSADTLRIMAEERASESGGVMHCFTE
PWDVAEQALAQNFYISLSGIVTFKSATEVQDVARRVPLERLLIETDSPYLAPVPFRGKPNEPAYVSYVGRFIAQQREMPD
EALAAATTDNFFRLFKIPAPRGA
>Mature_263_residues
MFVDSHCHINFEGLGDRLPQVLDNMRSHSVTHALCVSVDFETLPSVLEIARTYDNVYASVGVHPDHEDAREPTVAELVEL
AQHPKVVAIGETGLDYYRLEGRSIEDMEWQRERFRVHIRAAHQTGKPLIVHTRASSADTLRIMAEERASESGGVMHCFTE
PWDVAEQALAQNFYISLSGIVTFKSATEVQDVARRVPLERLLIETDSPYLAPVPFRGKPNEPAYVSYVGRFIAQQREMPD
EALAAATTDNFFRLFKIPAPRGA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=276, Percent_Identity=29.3478260869565, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI110349730, Length=264, Percent_Identity=26.5151515151515, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI14042943, Length=203, Percent_Identity=29.5566502463054, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI225903439, Length=172, Percent_Identity=32.5581395348837, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI110349734, Length=264, Percent_Identity=26.5151515151515, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI226061853, Length=269, Percent_Identity=26.0223048327138, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI226061614, Length=259, Percent_Identity=24.7104247104247, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI226061595, Length=226, Percent_Identity=25.2212389380531, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1787342, Length=268, Percent_Identity=46.6417910447761, Blast_Score=211, Evalue=3e-56,
Organism=Escherichia coli, GI87082439, Length=263, Percent_Identity=27.7566539923954, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI48994985, Length=216, Percent_Identity=33.3333333333333, Blast_Score=112, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17565396, Length=312, Percent_Identity=28.525641025641, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17559024, Length=284, Percent_Identity=26.4084507042254, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI71980746, Length=267, Percent_Identity=26.2172284644195, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17543026, Length=300, Percent_Identity=25.6666666666667, Blast_Score=91, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24648690, Length=289, Percent_Identity=26.9896193771626, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI221330018, Length=270, Percent_Identity=27.037037037037, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24586117, Length=270, Percent_Identity=27.037037037037, Blast_Score=78, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 29546; Mature: 29546

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVDSHCHINFEGLGDRLPQVLDNMRSHSVTHALCVSVDFETLPSVLEIARTYDNVYASV
CEECCEEEEECCCHHHHHHHHHHHHHHCCHHHHEEEEECHHHHHHHHHHHHHHHHHHEEC
GVHPDHEDAREPTVAELVELAQHPKVVAIGETGLDYYRLEGRSIEDMEWQRERFRVHIRA
CCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHEEEEEE
AHQTGKPLIVHTRASSADTLRIMAEERASESGGVMHCFTEPWDVAEQALAQNFYISLSGI
ECCCCCEEEEEECCCCCCCEEEEEHHCCCCCCCEEEEECCCHHHHHHHHHHHEEEEEEEE
VTFKSATEVQDVARRVPLERLLIETDSPYLAPVPFRGKPNEPAYVSYVGRFIAQQREMPD
EEECCHHHHHHHHHHCCHHHEEEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCH
EALAAATTDNFFRLFKIPAPRGA
HHHHHHCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MFVDSHCHINFEGLGDRLPQVLDNMRSHSVTHALCVSVDFETLPSVLEIARTYDNVYASV
CEECCEEEEECCCHHHHHHHHHHHHHHCCHHHHEEEEECHHHHHHHHHHHHHHHHHHEEC
GVHPDHEDAREPTVAELVELAQHPKVVAIGETGLDYYRLEGRSIEDMEWQRERFRVHIRA
CCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHEEEEEE
AHQTGKPLIVHTRASSADTLRIMAEERASESGGVMHCFTEPWDVAEQALAQNFYISLSGI
ECCCCCEEEEEECCCCCCCEEEEEHHCCCCCCCEEEEECCCHHHHHHHHHHHEEEEEEEE
VTFKSATEVQDVARRVPLERLLIETDSPYLAPVPFRGKPNEPAYVSYVGRFIAQQREMPD
EEECCHHHHHHHHHHCCHHHEEEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCH
EALAAATTDNFFRLFKIPAPRGA
HHHHHHCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]