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The map label for this gene is rpoE [H]

Identifier: 186475674

GI number: 186475674

Start: 1012106

End: 1012933

Strand: Direct

Name: rpoE [H]

Synonym: Bphy_0909

Alternate gene names: 186475674

Gene position: 1012106-1012933 (Clockwise)

Preceding gene: 186475670

Following gene: 186475675

Centisome position: 29.09

GC content: 67.87

Gene sequence:

>828_bases
GTGGATGAGACGGGAAATCATGCGGCGAGAGGTGGCGACGCACGCGCCGAGGCGGCACGCAGTCTGCGCTTTCAGCAGAT
GGCGCTGCCGCACCTCGATGCCGCATACAACCTTGCACGCTGGCTATGCGGCAATGGGCACGATGCCGACGACGTCGTGC
AGGAAGCGTTCATGCGGGCGTACCGCTTCTTCGACACGTTCCACGGCGAGACCGCGCGGCCCTGGTTGCTCGCGATCGTG
CGGCGCACGTGGTACACCGAATGGCGCAGGCGTTCGGGCGGCGTGAACGCGACGATCGAGTTCGACGAGAACCTCGACGA
CGCGTCGTTCGAAGGCTGGAGCGCGGGTTCGCCTGACCCCGAAGCGCTGCTGATCCGCGAAGAAGACACGCGGCTCGTGC
ATGAGGCGCTCGAACAGCTGGCCGTCGAATATCGCGAAGTGCTGATTTTGCGCGAACTGGAAGAGATGAGTTATCGCGAG
ATCGCGACCATCGCGGACCTGCCCGTGGGCACCGTGATGTCGAGGCTCGCGCGCGGGCGGCGCAAACTCGCGACGGCGCT
GACGTCGCTGCAATCGAAGGGGAGCGCGCGGTCGACGGGTGGCGCGCGCGATGGAGGCGCTGCGCAGCGTGCGCCGGACG
GAACGGGCGATGTGTCGGGCGCGCGACCGGCGGTGCGTGCGTCGACCCGAACACAGGATACGTCCCGTCCGGCGCACGAC
GGCGGCGTCGCACCCGACATCACACGCAAAACCCAAGGCGGCTGGATGCCGCACGCTCCCGGCGCGTTGCCGGGCGGACT
CGCACAAGAGGCGCCCGATGGACTGTAA

Upstream 100 bases:

>100_bases
TCCCGGATTTATTTTTTGCAGGATGCGCAGAACCCGGGAATAAACTGAATTGCAGATGGGTTTTGCAGCCGTGAAGTCTG
GGCAAGCCTGGAGGCGATCG

Downstream 100 bases:

>100_bases
CGAAGCACGGCCGCTTCTCGATGCGAATGCGGACCACGAACTCACGCCGCCGCAATCGCGCGACGTGCAGCGGCATATCG
AAAGCTGCGAATCTTGCCGG

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MDETGNHAARGGDARAEAARSLRFQQMALPHLDAAYNLARWLCGNGHDADDVVQEAFMRAYRFFDTFHGETARPWLLAIV
RRTWYTEWRRRSGGVNATIEFDENLDDASFEGWSAGSPDPEALLIREEDTRLVHEALEQLAVEYREVLILRELEEMSYRE
IATIADLPVGTVMSRLARGRRKLATALTSLQSKGSARSTGGARDGGAAQRAPDGTGDVSGARPAVRASTRTQDTSRPAHD
GGVAPDITRKTQGGWMPHAPGALPGGLAQEAPDGL

Sequences:

>Translated_275_residues
MDETGNHAARGGDARAEAARSLRFQQMALPHLDAAYNLARWLCGNGHDADDVVQEAFMRAYRFFDTFHGETARPWLLAIV
RRTWYTEWRRRSGGVNATIEFDENLDDASFEGWSAGSPDPEALLIREEDTRLVHEALEQLAVEYREVLILRELEEMSYRE
IATIADLPVGTVMSRLARGRRKLATALTSLQSKGSARSTGGARDGGAAQRAPDGTGDVSGARPAVRASTRTQDTSRPAHD
GGVAPDITRKTQGGWMPHAPGALPGGLAQEAPDGL
>Mature_275_residues
MDETGNHAARGGDARAEAARSLRFQQMALPHLDAAYNLARWLCGNGHDADDVVQEAFMRAYRFFDTFHGETARPWLLAIV
RRTWYTEWRRRSGGVNATIEFDENLDDASFEGWSAGSPDPEALLIREEDTRLVHEALEQLAVEYREVLILRELEEMSYRE
IATIADLPVGTVMSRLARGRRKLATALTSLQSKGSARSTGGARDGGAAQRAPDGTGDVSGARPAVRASTRTQDTSRPAHD
GGVAPDITRKTQGGWMPHAPGALPGGLAQEAPDGL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=197, Percent_Identity=32.994923857868, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 29950; Mature: 29950

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDETGNHAARGGDARAEAARSLRFQQMALPHLDAAYNLARWLCGNGHDADDVVQEAFMRA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
YRFFDTFHGETARPWLLAIVRRTWYTEWRRRSGGVNATIEFDENLDDASFEGWSAGSPDP
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCC
EALLIREEDTRLVHEALEQLAVEYREVLILRELEEMSYREIATIADLPVGTVMSRLARGR
CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
RKLATALTSLQSKGSARSTGGARDGGAAQRAPDGTGDVSGARPAVRASTRTQDTSRPAHD
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
GGVAPDITRKTQGGWMPHAPGALPGGLAQEAPDGL
CCCCCCCCHHCCCCCCCCCCCCCCCCHHCCCCCCC
>Mature Secondary Structure
MDETGNHAARGGDARAEAARSLRFQQMALPHLDAAYNLARWLCGNGHDADDVVQEAFMRA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
YRFFDTFHGETARPWLLAIVRRTWYTEWRRRSGGVNATIEFDENLDDASFEGWSAGSPDP
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCC
EALLIREEDTRLVHEALEQLAVEYREVLILRELEEMSYREIATIADLPVGTVMSRLARGR
CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
RKLATALTSLQSKGSARSTGGARDGGAAQRAPDGTGDVSGARPAVRASTRTQDTSRPAHD
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
GGVAPDITRKTQGGWMPHAPGALPGGLAQEAPDGL
CCCCCCCCHHCCCCCCCCCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]