| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is pncB [H]
Identifier: 186475573
GI number: 186475573
Start: 906133
End: 907332
Strand: Direct
Name: pncB [H]
Synonym: Bphy_0808
Alternate gene names: 186475573
Gene position: 906133-907332 (Clockwise)
Preceding gene: 186475566
Following gene: 186475574
Centisome position: 26.04
GC content: 59.92
Gene sequence:
>1200_bases ATGATCATTACATCGCTGTTCGATACCGACCTGTACAAGTTCACGATGATGCAGGTCGTGCTGCATCATTTCCCGGCCGC CAATGTCGAATACAAGTTCCGCTGCCGTACGCCGAAAGTCAACCTCGTGCCGTACATCGACGAAATACGCAGCGAAGTGC ACAAGCTCTGCAAGCTGCGCTTCAGCGAGGGCGAACTCGACTATTTGCGCCGGATGCGCTTCATCAAGAACGACTTCATC GATTTCCTCGCGCTCTTCCATCTGAACGAGAAGTACATCTCCATTACGCCGTCGGCGAAAGGCAACGGCGAGATCGAGAT CGACATCAAGGGGCCGTGGCTGCACACGATCCTCTTCGAAATCCCCGTGCTCGCGATCGTCAACGAAGTCTATTTCCGCA ACACGCAGCAGCAGCCCGATTACAGCGAAGGGCGCGAGCGCCTGCGCGACAAGATCCAGTTGCTAGGCGCGCGCCCCGAG TTCGCCGAATGCAAGATCGCCGACTACGGCACGCGCCGCCGCTTCTCGGGCCGCTGGCACGAAGAGGTGATCCTCACGCT CAAGGACGGCCTGCGCGAGCAGTTCGCCGGCACCAGCAACGTGTTTTATGCGATGAAGCACGGACTCACGCCGCTCGGCA CGATGGCGCATGAGTACCTGCAGGCCTGCCAGGCACTGGGCCCGCGCCTGCGCGATTCGCAGATCTTCGGGTTCGAAATG TGGGCGAAGGAATATCGCGGCGACCTGGGCATCGCTTTGTCGGACGTCTATGGCATGAAGGCGTTCCTGCGTGATTTCGA CATGTACTTCTGCAAGCTGTTCGACGGCGCGCGTCACGATTCCGGCGACCCGTTCGACTGGGGCGAGCGGCTTCTCGCGC ACTACGAAGCGAACCGCTGCGATCCGCGCACGAAGGTGCTCGTGTTCTCCGACGCGCTCGACATTCCGAAAGTGCTGCAG TTGTACGAGCGCTTCCGTGGCCGCTGCAAGCTGGCATTCGGCGTGGGCACGAACCTGACCAACGATCTCGGCTATAACCC GCTGCAGATCGTGATCAAGATGGTCAAGTGCAACGGCCAGCCCGTCGCGAAGCTGTCGGACTCGCCGGGCAAGAACATGT GCGAAGACAAGGCGTACCTCGCCTATCTGCGCCAGGTGTTCGGCATCGAGCAGCCTGAAGAAGAAGCCGCAGGCAAATAA
Upstream 100 bases:
>100_bases CTCGCGCATTGGAACGACTGCCGGCGCGCATTCGGGTAACATGCGACAGCATCTTCGCGAGACGTCTTCCGATTCTCATG CAGTTCCGGTTTGCAAGATC
Downstream 100 bases:
>100_bases CGCCCCGCATGCCTTTCACAGGTGTCGCAGCGCATGTGAAGATCATTTTCGATGCTTCGCGCAAGCGCCGCTATAGACCG TCCGGCTTGGGCGATACACT
Product: nicotinate phosphoribosyltransferase
Products: NA
Alternate protein names: NAPRTase [H]
Number of amino acids: Translated: 399; Mature: 399
Protein sequence:
>399_residues MIITSLFDTDLYKFTMMQVVLHHFPAANVEYKFRCRTPKVNLVPYIDEIRSEVHKLCKLRFSEGELDYLRRMRFIKNDFI DFLALFHLNEKYISITPSAKGNGEIEIDIKGPWLHTILFEIPVLAIVNEVYFRNTQQQPDYSEGRERLRDKIQLLGARPE FAECKIADYGTRRRFSGRWHEEVILTLKDGLREQFAGTSNVFYAMKHGLTPLGTMAHEYLQACQALGPRLRDSQIFGFEM WAKEYRGDLGIALSDVYGMKAFLRDFDMYFCKLFDGARHDSGDPFDWGERLLAHYEANRCDPRTKVLVFSDALDIPKVLQ LYERFRGRCKLAFGVGTNLTNDLGYNPLQIVIKMVKCNGQPVAKLSDSPGKNMCEDKAYLAYLRQVFGIEQPEEEAAGK
Sequences:
>Translated_399_residues MIITSLFDTDLYKFTMMQVVLHHFPAANVEYKFRCRTPKVNLVPYIDEIRSEVHKLCKLRFSEGELDYLRRMRFIKNDFI DFLALFHLNEKYISITPSAKGNGEIEIDIKGPWLHTILFEIPVLAIVNEVYFRNTQQQPDYSEGRERLRDKIQLLGARPE FAECKIADYGTRRRFSGRWHEEVILTLKDGLREQFAGTSNVFYAMKHGLTPLGTMAHEYLQACQALGPRLRDSQIFGFEM WAKEYRGDLGIALSDVYGMKAFLRDFDMYFCKLFDGARHDSGDPFDWGERLLAHYEANRCDPRTKVLVFSDALDIPKVLQ LYERFRGRCKLAFGVGTNLTNDLGYNPLQIVIKMVKCNGQPVAKLSDSPGKNMCEDKAYLAYLRQVFGIEQPEEEAAGK >Mature_399_residues MIITSLFDTDLYKFTMMQVVLHHFPAANVEYKFRCRTPKVNLVPYIDEIRSEVHKLCKLRFSEGELDYLRRMRFIKNDFI DFLALFHLNEKYISITPSAKGNGEIEIDIKGPWLHTILFEIPVLAIVNEVYFRNTQQQPDYSEGRERLRDKIQLLGARPE FAECKIADYGTRRRFSGRWHEEVILTLKDGLREQFAGTSNVFYAMKHGLTPLGTMAHEYLQACQALGPRLRDSQIFGFEM WAKEYRGDLGIALSDVYGMKAFLRDFDMYFCKLFDGARHDSGDPFDWGERLLAHYEANRCDPRTKVLVFSDALDIPKVLQ LYERFRGRCKLAFGVGTNLTNDLGYNPLQIVIKMVKCNGQPVAKLSDSPGKNMCEDKAYLAYLRQVFGIEQPEEEAAGK
Specific function: NAD biosynthesis; nicotinamide to NaMN; second step. [C]
COG id: COG1488
COG function: function code H; Nicotinic acid phosphoribosyltransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the NAPRTase family [H]
Homologues:
Organism=Escherichia coli, GI1787162, Length=392, Percent_Identity=42.6020408163265, Blast_Score=325, Evalue=4e-90, Organism=Saccharomyces cerevisiae, GI6324783, Length=414, Percent_Identity=28.9855072463768, Blast_Score=191, Evalue=2e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006406 - InterPro: IPR015977 - InterPro: IPR007229 - InterPro: IPR002638 [H]
Pfam domain/function: PF04095 NAPRTase [H]
EC number: =2.4.2.11 [H]
Molecular weight: Translated: 46173; Mature: 46173
Theoretical pI: Translated: 7.49; Mature: 7.49
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIITSLFDTDLYKFTMMQVVLHHFPAANVEYKFRCRTPKVNLVPYIDEIRSEVHKLCKLR CEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC FSEGELDYLRRMRFIKNDFIDFLALFHLNEKYISITPSAKGNGEIEIDIKGPWLHTILFE CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHH IPVLAIVNEVYFRNTQQQPDYSEGRERLRDKIQLLGARPEFAECKIADYGTRRRFSGRWH HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCHH EEVILTLKDGLREQFAGTSNVFYAMKHGLTPLGTMAHEYLQACQALGPRLRDSQIFGFEM HHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH WAKEYRGDLGIALSDVYGMKAFLRDFDMYFCKLFDGARHDSGDPFDWGERLLAHYEANRC HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC DPRTKVLVFSDALDIPKVLQLYERFRGRCKLAFGVGTNLTNDLGYNPLQIVIKMVKCNGQ CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC PVAKLSDSPGKNMCEDKAYLAYLRQVFGIEQPEEEAAGK CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCC >Mature Secondary Structure MIITSLFDTDLYKFTMMQVVLHHFPAANVEYKFRCRTPKVNLVPYIDEIRSEVHKLCKLR CEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC FSEGELDYLRRMRFIKNDFIDFLALFHLNEKYISITPSAKGNGEIEIDIKGPWLHTILFE CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHH IPVLAIVNEVYFRNTQQQPDYSEGRERLRDKIQLLGARPEFAECKIADYGTRRRFSGRWH HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCHH EEVILTLKDGLREQFAGTSNVFYAMKHGLTPLGTMAHEYLQACQALGPRLRDSQIFGFEM HHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH WAKEYRGDLGIALSDVYGMKAFLRDFDMYFCKLFDGARHDSGDPFDWGERLLAHYEANRC HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC DPRTKVLVFSDALDIPKVLQLYERFRGRCKLAFGVGTNLTNDLGYNPLQIVIKMVKCNGQ CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC PVAKLSDSPGKNMCEDKAYLAYLRQVFGIEQPEEEAAGK CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA