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The map label for this gene is rimM

Identifier: 186475535

GI number: 186475535

Start: 866650

End: 867345

Strand: Direct

Name: rimM

Synonym: Bphy_0770

Alternate gene names: 186475535

Gene position: 866650-867345 (Clockwise)

Preceding gene: 186475534

Following gene: 186475536

Centisome position: 24.91

GC content: 62.93

Gene sequence:

>696_bases
ATGTCGGAGCGTGATTCGGGTAGTTCAGGTCGCGCGAAGGCGAAAAGGCAGCCTGGCGCGAAGGCGCCATTTGGCCCGTT
CGTCCGCAAGCCGGTCGAGAAGGTCGAGGCGAATGCCGCAGCGGCGCAGAAAGCTCGCGCTGAATCGGCGGAAAGCTGGC
CCGACGACGCAGTCGAAGTCGGCGCAATCGTCGACGCATACGGTCTCAAAGGTTGGGTGAAGGTGGCCGCGCACGCGGAC
GCCGGTCATGGCGGCGACGCCTTGCTCAGCACGAAACGCTGGTGGCTCGAGAAGGGCCGCGAGCGTCAATCGACGCCCTG
CCTGCAGTCAAAGGTTCACGGCGACAGCATCGTTGCGCAACTGGGCGGCACTGCCGACCGCGATGCTGCCCTTGCGTTGC
GCGGTCACCGCGTGTACGTCCGCCGCCGCGATTTCCCCGCGCTCGGAACCGACGAATATTACTGGGTCGACCTGGTTGGT
CTCGATGTCGTGAACGAGGCGGGCATCGAACTCGGTAAGGTTGCAGATCTGATCGACAACGGTGCGCAGTCGGTGTTGCG
CATCGAGTATCCGGCTATTGGCAAAGACGGCAAGCCGGTGATCGGCGAACGCTTGATCCCGTTCGTCGGCGTCTATGTCA
AAACGGTGGATCAGGCGGCGAAGAAGATCATCGTCGACTGGGAAGCCGATTACTAG

Upstream 100 bases:

>100_bases
GTAAATTGCAGTTTCACGGTGCATCTTCGGCTCGTGCGACAGTGGTTTTGCGCGAGTCTGGGATGTACAGGTTTGACGTA
TGCAGGCTTGAGGTTCGCTG

Downstream 100 bases:

>100_bases
AACATTCGCTTCACGGAGAGAGCGATGCAGTTCGATATCGTTACGCTCTTTCCTGACATGTTTCGCGCGCTGACCGACTG
GGGCATCACGAGCCGCGCAG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSERDSGSSGRAKAKRQPGAKAPFGPFVRKPVEKVEANAAAAQKARAESAESWPDDAVEVGAIVDAYGLKGWVKVAAHAD
AGHGGDALLSTKRWWLEKGRERQSTPCLQSKVHGDSIVAQLGGTADRDAALALRGHRVYVRRRDFPALGTDEYYWVDLVG
LDVVNEAGIELGKVADLIDNGAQSVLRIEYPAIGKDGKPVIGERLIPFVGVYVKTVDQAAKKIIVDWEADY

Sequences:

>Translated_231_residues
MSERDSGSSGRAKAKRQPGAKAPFGPFVRKPVEKVEANAAAAQKARAESAESWPDDAVEVGAIVDAYGLKGWVKVAAHAD
AGHGGDALLSTKRWWLEKGRERQSTPCLQSKVHGDSIVAQLGGTADRDAALALRGHRVYVRRRDFPALGTDEYYWVDLVG
LDVVNEAGIELGKVADLIDNGAQSVLRIEYPAIGKDGKPVIGERLIPFVGVYVKTVDQAAKKIIVDWEADY
>Mature_230_residues
SERDSGSSGRAKAKRQPGAKAPFGPFVRKPVEKVEANAAAAQKARAESAESWPDDAVEVGAIVDAYGLKGWVKVAAHADA
GHGGDALLSTKRWWLEKGRERQSTPCLQSKVHGDSIVAQLGGTADRDAALALRGHRVYVRRRDFPALGTDEYYWVDLVGL
DVVNEAGIELGKVADLIDNGAQSVLRIEYPAIGKDGKPVIGERLIPFVGVYVKTVDQAAKKIIVDWEADY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=179, Percent_Identity=31.8435754189944, Blast_Score=99, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_BURP8 (B2JF30)

Other databases:

- EMBL:   CP001043
- RefSeq:   YP_001857005.1
- ProteinModelPortal:   B2JF30
- SMR:   B2JF30
- GeneID:   6242268
- GenomeReviews:   CP001043_GR
- KEGG:   bph:Bphy_0770
- HOGENOM:   HBG703775
- OMA:   PHSAQAD
- ProtClustDB:   PRK00122
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 24918; Mature: 24787

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERDSGSSGRAKAKRQPGAKAPFGPFVRKPVEKVEANAAAAQKARAESAESWPDDAVEV
CCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
GAIVDAYGLKGWVKVAAHADAGHGGDALLSTKRWWLEKGRERQSTPCLQSKVHGDSIVAQ
HHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHH
LGGTADRDAALALRGHRVYVRRRDFPALGTDEYYWVDLVGLDVVNEAGIELGKVADLIDN
HCCCCCCCCEEEEECCEEEEEECCCCCCCCCCEEEEEEECHHHHHHCCCCHHHHHHHHHH
GAQSVLRIEYPAIGKDGKPVIGERLIPFVGVYVKTVDQAAKKIIVDWEADY
HCHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC
>Mature Secondary Structure 
SERDSGSSGRAKAKRQPGAKAPFGPFVRKPVEKVEANAAAAQKARAESAESWPDDAVEV
CCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
GAIVDAYGLKGWVKVAAHADAGHGGDALLSTKRWWLEKGRERQSTPCLQSKVHGDSIVAQ
HHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHH
LGGTADRDAALALRGHRVYVRRRDFPALGTDEYYWVDLVGLDVVNEAGIELGKVADLIDN
HCCCCCCCCEEEEECCEEEEEECCCCCCCCCCEEEEEEECHHHHHHCCCCHHHHHHHHHH
GAQSVLRIEYPAIGKDGKPVIGERLIPFVGVYVKTVDQAAKKIIVDWEADY
HCHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA