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The map label for this gene is yfdE [H]

Identifier: 186475448

GI number: 186475448

Start: 767269

End: 768519

Strand: Direct

Name: yfdE [H]

Synonym: Bphy_0683

Alternate gene names: 186475448

Gene position: 767269-768519 (Clockwise)

Preceding gene: 186475446

Following gene: 186475449

Centisome position: 22.05

GC content: 66.91

Gene sequence:

>1251_bases
ATGCAAGGTTCGACTCTGCCGCTCGAAGGCCTGCGCGTCATCGACTTCTCACGTGTGCTGGCGGGTCCGTATTGCACTGC
GCTGCTCGGCGATCTGGGCGCAGATGTGATCAAGATCGAGCCGCCCGCAGGCGACGACTATCGTGCCGTCGGTCCGATCG
GCGAGGACGGCGACAGCGGCCTGTTCGCCGCGATGAATCGCAACAAGCGCAGCATCGTGCTCGATCTGAAGACGGACGCA
GCGCGTGAGCTTGCGCGCGCATTGTGCGCGGACGCCGATGTCGTCGTCGAGAATTTCAGGCCCGGTGTCGCCGGCAAGCT
CGGGATCGGCTACGCGGAGTTGAGCGCCATCAATCCCTCGCTCGTGTATGCGAGCGTGTCGGGGTTCGGGCAGACGGGGC
CCGAATCACATCGGCCTGCATACGACATCATCCTGCAGGCGATGTGCGGCCTGATGGACGCAACCGGTTCGCCCGACGGG
CCACCGACGATGATCGGCGAGTCGGTGTCGGACGTCGTCAGCGGGCTGTTCGCGTCGTGGGGCGTGCTCGCCGCGCTATT
CGCGCGCGAGAAGACCGGCAAAGGCACGCACGTCGACGTGTCGATGTTCGACGCGACACTTGGCCTGAGCGCGACGCTCG
TCGCGCGCTACGCCGTCACTGGCCTTGCGCCACGCCGCGTGGGCAACCGGCATCCGTCGTCGGCGCCGTTCGGCGCGTAT
CGCGCGGCCGATGGCTTCTATGTGGTGGCAGTGCTGAACAACAAGCTGTTTGCCGCGTTCGCGCAGGCAATCGGCGCGCC
GCATCTGACGGAAGATCCGCGTTTTGCCACCGATGCGTCGCGCTACGCGCACGAAGCCGATCTGCGTGCGACGATCGACG
CATGGTCGTCGGCTCGATCGGTCGAAGAGGTCGTCGCGGCGCTCGGCGCCGCGGGCATTCCAGTCGCGCCAATCCGCAGT
CTGCCGGAAGCGCTGGAGAGCCCGCACGCGAGGCATCGCGGGTTGCTGACCAACGTGCAGCGGGACGGCAGACCTGCGAC
GCGCCTGCCGTCGCAGCCGGTGAAGTTCTCTGCGTACGGCGTCAATCGCGTGACGCCTGCACCGGGGCTCGGTGAACATG
CCGCTGCCCTCTTGCAGGCGCTCGGTTACGACGCGCAAGACATTGAGGCGTTGCGCGTGCGCGGCGCGTTTGGCGCGAGC
GTGCCGACAAGGAACGACGCCGATTGCCGACAGGAGCGGGACCATGCATAA

Upstream 100 bases:

>100_bases
TGCGCATCAGAAAAACCTATAGGTGGTAACTAAATTCCATATTTTACTTGATAGGCTGTGGCGCCCAGAATCGGCGCATC
CCTGATGAAAGGAGTGTTCG

Downstream 100 bases:

>100_bases
GCGGCTGGGTATCGAACACGGCGACCTCGAAATCGCCGATGCGGTTGCGCGCTTTGCGCAAAGCGAACTCGCGCCAGGTG
CGGCGCAAGTGGACCGCGAA

Product: Formyl-CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MQGSTLPLEGLRVIDFSRVLAGPYCTALLGDLGADVIKIEPPAGDDYRAVGPIGEDGDSGLFAAMNRNKRSIVLDLKTDA
ARELARALCADADVVVENFRPGVAGKLGIGYAELSAINPSLVYASVSGFGQTGPESHRPAYDIILQAMCGLMDATGSPDG
PPTMIGESVSDVVSGLFASWGVLAALFAREKTGKGTHVDVSMFDATLGLSATLVARYAVTGLAPRRVGNRHPSSAPFGAY
RAADGFYVVAVLNNKLFAAFAQAIGAPHLTEDPRFATDASRYAHEADLRATIDAWSSARSVEEVVAALGAAGIPVAPIRS
LPEALESPHARHRGLLTNVQRDGRPATRLPSQPVKFSAYGVNRVTPAPGLGEHAAALLQALGYDAQDIEALRVRGAFGAS
VPTRNDADCRQERDHA

Sequences:

>Translated_416_residues
MQGSTLPLEGLRVIDFSRVLAGPYCTALLGDLGADVIKIEPPAGDDYRAVGPIGEDGDSGLFAAMNRNKRSIVLDLKTDA
ARELARALCADADVVVENFRPGVAGKLGIGYAELSAINPSLVYASVSGFGQTGPESHRPAYDIILQAMCGLMDATGSPDG
PPTMIGESVSDVVSGLFASWGVLAALFAREKTGKGTHVDVSMFDATLGLSATLVARYAVTGLAPRRVGNRHPSSAPFGAY
RAADGFYVVAVLNNKLFAAFAQAIGAPHLTEDPRFATDASRYAHEADLRATIDAWSSARSVEEVVAALGAAGIPVAPIRS
LPEALESPHARHRGLLTNVQRDGRPATRLPSQPVKFSAYGVNRVTPAPGLGEHAAALLQALGYDAQDIEALRVRGAFGAS
VPTRNDADCRQERDHA
>Mature_416_residues
MQGSTLPLEGLRVIDFSRVLAGPYCTALLGDLGADVIKIEPPAGDDYRAVGPIGEDGDSGLFAAMNRNKRSIVLDLKTDA
ARELARALCADADVVVENFRPGVAGKLGIGYAELSAINPSLVYASVSGFGQTGPESHRPAYDIILQAMCGLMDATGSPDG
PPTMIGESVSDVVSGLFASWGVLAALFAREKTGKGTHVDVSMFDATLGLSATLVARYAVTGLAPRRVGNRHPSSAPFGAY
RAADGFYVVAVLNNKLFAAFAQAIGAPHLTEDPRFATDASRYAHEADLRATIDAWSSARSVEEVVAALGAAGIPVAPIRS
LPEALESPHARHRGLLTNVQRDGRPATRLPSQPVKFSAYGVNRVTPAPGLGEHAAALLQALGYDAQDIEALRVRGAFGAS
VPTRNDADCRQERDHA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=387, Percent_Identity=33.0749354005168, Blast_Score=252, Evalue=5e-67,
Organism=Homo sapiens, GI300863124, Length=413, Percent_Identity=31.4769975786925, Blast_Score=238, Evalue=8e-63,
Organism=Homo sapiens, GI300863126, Length=387, Percent_Identity=29.9741602067183, Blast_Score=198, Evalue=8e-51,
Organism=Homo sapiens, GI13376042, Length=413, Percent_Identity=28.0871670702179, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI266456254, Length=395, Percent_Identity=27.5949367088608, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI42794625, Length=395, Percent_Identity=27.5949367088608, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI266458393, Length=266, Percent_Identity=32.3308270676692, Blast_Score=129, Evalue=6e-30,
Organism=Homo sapiens, GI266458397, Length=258, Percent_Identity=32.9457364341085, Blast_Score=126, Evalue=4e-29,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=36.551724137931, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=36.551724137931, Blast_Score=91, Evalue=1e-18,
Organism=Escherichia coli, GI87082093, Length=377, Percent_Identity=41.6445623342175, Blast_Score=297, Evalue=1e-81,
Organism=Escherichia coli, GI1788717, Length=417, Percent_Identity=33.5731414868106, Blast_Score=206, Evalue=3e-54,
Organism=Escherichia coli, GI1786222, Length=399, Percent_Identity=29.3233082706767, Blast_Score=134, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI115535051, Length=299, Percent_Identity=28.0936454849498, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=312, Percent_Identity=25.9615384615385, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24648431, Length=390, Percent_Identity=34.3589743589744, Blast_Score=261, Evalue=7e-70,
Organism=Drosophila melanogaster, GI24585488, Length=287, Percent_Identity=29.2682926829268, Blast_Score=122, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43594; Mature: 43594

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGSTLPLEGLRVIDFSRVLAGPYCTALLGDLGADVIKIEPPAGDDYRAVGPIGEDGDSG
CCCCCCCCCCCEEEHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCEEECCCCCCCCCC
LFAAMNRNKRSIVLDLKTDAARELARALCADADVVVENFRPGVAGKLGIGYAELSAINPS
EEEEECCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCC
LVYASVSGFGQTGPESHRPAYDIILQAMCGLMDATGSPDGPPTMIGESVSDVVSGLFASW
EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
GVLAALFAREKTGKGTHVDVSMFDATLGLSATLVARYAVTGLAPRRVGNRHPSSAPFGAY
HHHHHHHHHHCCCCCCEEEHHHHHHHHCHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCE
RAADGFYVVAVLNNKLFAAFAQAIGAPHLTEDPRFATDASRYAHEADLRATIDAWSSARS
ECCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VEEVVAALGAAGIPVAPIRSLPEALESPHARHRGLLTNVQRDGRPATRLPSQPVKFSAYG
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC
VNRVTPAPGLGEHAAALLQALGYDAQDIEALRVRGAFGASVPTRNDADCRQERDHA
CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCC
>Mature Secondary Structure
MQGSTLPLEGLRVIDFSRVLAGPYCTALLGDLGADVIKIEPPAGDDYRAVGPIGEDGDSG
CCCCCCCCCCCEEEHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCEEECCCCCCCCCC
LFAAMNRNKRSIVLDLKTDAARELARALCADADVVVENFRPGVAGKLGIGYAELSAINPS
EEEEECCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCC
LVYASVSGFGQTGPESHRPAYDIILQAMCGLMDATGSPDGPPTMIGESVSDVVSGLFASW
EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
GVLAALFAREKTGKGTHVDVSMFDATLGLSATLVARYAVTGLAPRRVGNRHPSSAPFGAY
HHHHHHHHHHCCCCCCEEEHHHHHHHHCHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCE
RAADGFYVVAVLNNKLFAAFAQAIGAPHLTEDPRFATDASRYAHEADLRATIDAWSSARS
ECCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VEEVVAALGAAGIPVAPIRSLPEALESPHARHRGLLTNVQRDGRPATRLPSQPVKFSAYG
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC
VNRVTPAPGLGEHAAALLQALGYDAQDIEALRVRGAFGASVPTRNDADCRQERDHA
CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]