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The map label for this gene is ydjQ [C]

Identifier: 186475443

GI number: 186475443

Start: 762698

End: 763876

Strand: Direct

Name: ydjQ [C]

Synonym: Bphy_0677

Alternate gene names: 186475443

Gene position: 762698-763876 (Clockwise)

Preceding gene: 186475442

Following gene: 186475446

Centisome position: 21.92

GC content: 67.18

Gene sequence:

>1179_bases
ATGTCCGAACCGTTTCTGTCCGAGCCTGCCCTCGATGTGCCAATTGTTTTCGTCGACCTTGAAACCACGGGGGGCTCTGT
CGGCGATCATAGAATCACGGAAGTCGGCGTCGTCGAAGTGGGACCGAATGGTGTGTCCAGCTGGACTACGCTGGTCGACC
CCGGTCAGCCCATCCCGCCATTCATCCAGCAATTGACGGGCATCACCAACGACATGGTGCGCGGTGCGCCGACGTTCGAA
GCCATTGCCGCCGACCTGTTCGCGCGGCTCGACGGCAAGCTTTTCATCGCGCACAACGCGAGCTTCGATCGCGGTTTCCT
GCGCAGCGAGTTTCAGCGAGCCGGTTTCGCGTTCAATCCCGACGTACTGTGCACCGTGCGCCTCTCGCGGGCGCTGTTTC
CCGCCGAAAAGCGCCACGGCCTCGACGCGCTCGTCGAGCGGCACGCACTCATGCCGTCAGACCGGCACCGCGCGCTCGCC
GACGCCGATCTGCTCTGGCAGTTCTGGCAGCGCCTGCACGGCCTCGTACCCGTCGACGTGCTGCGCGCGCAGATCGACAA
GACCATGCGCCGTTTCCGGCTGGCGGGCGATATCACGGAAGACCTGATCGATACGGCGCCTGCCGGTTGCGGCGTATATG
CGTTCTATGGCGAGAGCGACGCGCCGCTCTATGTAGGACGGAGCGTGCGCGTGCGTCAGCGGTTGCGGTCGCATCTGACG
GGCGAACGCCGTTCGTCGAAAGAGATGAAGCTTGCGCAGCAAGTGCGCCGCGTCGAATGGCGCGCGACGGGCGGCGAGAT
CGGCGCTCTGCTCGCCGAAGCCCAACTGATCGCCGCGCTGCGGCCGCCGAACAACCGCGTGCCGCGCGTGAGCCGCGGCG
ATCCTGTCGACGCGCCGTGGCCCTACGACGGCGCAATTGCGTTCGAGGAGCGGGACGCGGCGGAAGGCGCGCGCGTCTTT
CATATCGTCGACGGGTGGCGCTATGTGGGGCACGCGCCCTCGCTCGCCGAGGCTGCAACGCTGCTGGCGACAAGCGCGCC
CGGTGCGTTCGAACTGTCGACGTGGCGCATTCTCCAGTCGCATCTCGCGCGCGGCCTCCGTGTGCTGCCGCTCAGCCGCC
CGGTTGTCCAGCCGACCGGCGCTGTCACGCTCGCAGCAGCCCCTGCCGGCGCCGCCTAA

Upstream 100 bases:

>100_bases
AGCGATCGTACGCCCCATTCACGTTGATCGAGTTTGCGCGCGCAAGCCTTGCCGCCGATAGGGCATACTTCTGCCAAGTC
CTGCATCTTCAGCTTTCCTC

Downstream 100 bases:

>100_bases
CCCGTCGCCCCCACTCCGCCCGATTCGCACACATGCCCGAGCGCCCGCGTCAGCGCGGCGTTATGGGTGTTGTCGTAGCG
GGTGAGGGACTTCCAGTTGT

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MSEPFLSEPALDVPIVFVDLETTGGSVGDHRITEVGVVEVGPNGVSSWTTLVDPGQPIPPFIQQLTGITNDMVRGAPTFE
AIAADLFARLDGKLFIAHNASFDRGFLRSEFQRAGFAFNPDVLCTVRLSRALFPAEKRHGLDALVERHALMPSDRHRALA
DADLLWQFWQRLHGLVPVDVLRAQIDKTMRRFRLAGDITEDLIDTAPAGCGVYAFYGESDAPLYVGRSVRVRQRLRSHLT
GERRSSKEMKLAQQVRRVEWRATGGEIGALLAEAQLIAALRPPNNRVPRVSRGDPVDAPWPYDGAIAFEERDAAEGARVF
HIVDGWRYVGHAPSLAEAATLLATSAPGAFELSTWRILQSHLARGLRVLPLSRPVVQPTGAVTLAAAPAGAA

Sequences:

>Translated_392_residues
MSEPFLSEPALDVPIVFVDLETTGGSVGDHRITEVGVVEVGPNGVSSWTTLVDPGQPIPPFIQQLTGITNDMVRGAPTFE
AIAADLFARLDGKLFIAHNASFDRGFLRSEFQRAGFAFNPDVLCTVRLSRALFPAEKRHGLDALVERHALMPSDRHRALA
DADLLWQFWQRLHGLVPVDVLRAQIDKTMRRFRLAGDITEDLIDTAPAGCGVYAFYGESDAPLYVGRSVRVRQRLRSHLT
GERRSSKEMKLAQQVRRVEWRATGGEIGALLAEAQLIAALRPPNNRVPRVSRGDPVDAPWPYDGAIAFEERDAAEGARVF
HIVDGWRYVGHAPSLAEAATLLATSAPGAFELSTWRILQSHLARGLRVLPLSRPVVQPTGAVTLAAAPAGAA
>Mature_391_residues
SEPFLSEPALDVPIVFVDLETTGGSVGDHRITEVGVVEVGPNGVSSWTTLVDPGQPIPPFIQQLTGITNDMVRGAPTFEA
IAADLFARLDGKLFIAHNASFDRGFLRSEFQRAGFAFNPDVLCTVRLSRALFPAEKRHGLDALVERHALMPSDRHRALAD
ADLLWQFWQRLHGLVPVDVLRAQIDKTMRRFRLAGDITEDLIDTAPAGCGVYAFYGESDAPLYVGRSVRVRQRLRSHLTG
ERRSSKEMKLAQQVRRVEWRATGGEIGALLAEAQLIAALRPPNNRVPRVSRGDPVDAPWPYDGAIAFEERDAAEGARVFH
IVDGWRYVGHAPSLAEAATLLATSAPGAFELSTWRILQSHLARGLRVLPLSRPVVQPTGAVTLAAAPAGAA

Specific function: Unknown

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788037, Length=93, Percent_Identity=45.1612903225806, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786409, Length=173, Percent_Identity=30.0578034682081, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337
- InterPro:   IPR000305 [H]

Pfam domain/function: PF00929 Exonuc_X-T; PF01541 GIY-YIG [H]

EC number: NA

Molecular weight: Translated: 42764; Mature: 42633

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS50164 UVRC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPFLSEPALDVPIVFVDLETTGGSVGDHRITEVGVVEVGPNGVSSWTTLVDPGQPIPP
CCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCEEECCCCCCCCH
FIQQLTGITNDMVRGAPTFEAIAADLFARLDGKLFIAHNASFDRGFLRSEFQRAGFAFNP
HHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCC
DVLCTVRLSRALFPAEKRHGLDALVERHALMPSDRHRALADADLLWQFWQRLHGLVPVDV
CEEEEEEHHHHHCCHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
LRAQIDKTMRRFRLAGDITEDLIDTAPAGCGVYAFYGESDAPLYVGRSVRVRQRLRSHLT
HHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCHHHHHHHHHHHC
GERRSSKEMKLAQQVRRVEWRATGGEIGALLAEAQLIAALRPPNNRVPRVSRGDPVDAPW
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCC
PYDGAIAFEERDAAEGARVFHIVDGWRYVGHAPSLAEAATLLATSAPGAFELSTWRILQS
CCCCEEEECCCCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHH
HLARGLRVLPLSRPVVQPTGAVTLAAAPAGAA
HHHCCEEEEECCCCCCCCCCCEEEEECCCCCC
>Mature Secondary Structure 
SEPFLSEPALDVPIVFVDLETTGGSVGDHRITEVGVVEVGPNGVSSWTTLVDPGQPIPP
CCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCEEECCCCCCCCH
FIQQLTGITNDMVRGAPTFEAIAADLFARLDGKLFIAHNASFDRGFLRSEFQRAGFAFNP
HHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCC
DVLCTVRLSRALFPAEKRHGLDALVERHALMPSDRHRALADADLLWQFWQRLHGLVPVDV
CEEEEEEHHHHHCCHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
LRAQIDKTMRRFRLAGDITEDLIDTAPAGCGVYAFYGESDAPLYVGRSVRVRQRLRSHLT
HHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCHHHHHHHHHHHC
GERRSSKEMKLAQQVRRVEWRATGGEIGALLAEAQLIAALRPPNNRVPRVSRGDPVDAPW
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCC
PYDGAIAFEERDAAEGARVFHIVDGWRYVGHAPSLAEAATLLATSAPGAFELSTWRILQS
CCCCEEEECCCCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHH
HLARGLRVLPLSRPVVQPTGAVTLAAAPAGAA
HHHCCEEEEECCCCCCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]