| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is map [H]
Identifier: 186475419
GI number: 186475419
Start: 739727
End: 740512
Strand: Direct
Name: map [H]
Synonym: Bphy_0653
Alternate gene names: 186475419
Gene position: 739727-740512 (Clockwise)
Preceding gene: 186475418
Following gene: 186475420
Centisome position: 21.26
GC content: 63.74
Gene sequence:
>786_bases ATGGCCATCACCTATAAAACCTCAGAAGACATCGCGCGCCTGCGCATCTCGGGCCGGCTCGCCGCCGACGTGCTCGCCAT GATTGGCGAGCACGTGAAGCCCGGCGTTTCGACGGGCGAGCTCGACGCGATATGCCACGACTACATCGTCAACACGCAGA AGGCGATTGCCGCGAACGTCGGCTATATGGGCTTTCCGAAGACGGTCTGCACGTCCGTGAACGCCGTCGTGTGCCACGGC ATTCCCGATCGCAGCGAAGTCCTCAAGGACGGCGACATCATCAACATCGACGTGGCCGTCATCAAGGATGGCTACTTCGG CGACACGAGCCGCATGTACACGGTCGGCCAGTCGAGCACCGTCGCGCAACAGCTGATCGATACGACGTATGAGGCGATGC TCGCCGGCATCCGCCAGGTGAAGCCTGGCGCGACGCTCGGCGACGTCGGCCATGCCATCCAGCAGATCGCGCAGCGCGAG GGCTTTTCGATCGTGCGCGATTACTGCGGGCATGGCATCGGCAAGGTCTATCACGAAGACCCTCAGGTGTTGCACTACGG CCAGCCGGGGCAGGGAGTACGCCTGAAGCCGGGCATGGTGTTCACGATCGAACCGATGATCAATGCGGGCCGCGCCGGTA CGACGGTGATGCGCGACGGCTGGACTGTCGTCACCAAAGACCGTTCGCTGTCCGCGCAGTGGGAGCACATGGTCGCCGTC ACCGACGACAGCTATGAGCTGCTCACGCCGTGGCCCGACGGTACGGGGCGCTATGAGGCGCCGTGA
Upstream 100 bases:
>100_bases GTGCAGATCCAGGCACCGCCGCGATCACCGCGGCGCCGGCGCTCAGGCGAAAGCCGCTGATCCGCTCGCCGCGTCATGCG TCCCGTCAACCGTTCCCGAC
Downstream 100 bases:
>100_bases TGGGCGGCTGCGCGCGGGAATGGCGGCTTGCAACCGTTTGCGGCAGTCTGCATACGATGCGGCGCCCCTTTCCGGCACGT GCGTGTGCCGTTTTTGCGCG
Product: methionine aminopeptidase, type I
Products: NA
Alternate protein names: MAP; Peptidase M [H]
Number of amino acids: Translated: 261; Mature: 260
Protein sequence:
>261_residues MAITYKTSEDIARLRISGRLAADVLAMIGEHVKPGVSTGELDAICHDYIVNTQKAIAANVGYMGFPKTVCTSVNAVVCHG IPDRSEVLKDGDIINIDVAVIKDGYFGDTSRMYTVGQSSTVAQQLIDTTYEAMLAGIRQVKPGATLGDVGHAIQQIAQRE GFSIVRDYCGHGIGKVYHEDPQVLHYGQPGQGVRLKPGMVFTIEPMINAGRAGTTVMRDGWTVVTKDRSLSAQWEHMVAV TDDSYELLTPWPDGTGRYEAP
Sequences:
>Translated_261_residues MAITYKTSEDIARLRISGRLAADVLAMIGEHVKPGVSTGELDAICHDYIVNTQKAIAANVGYMGFPKTVCTSVNAVVCHG IPDRSEVLKDGDIINIDVAVIKDGYFGDTSRMYTVGQSSTVAQQLIDTTYEAMLAGIRQVKPGATLGDVGHAIQQIAQRE GFSIVRDYCGHGIGKVYHEDPQVLHYGQPGQGVRLKPGMVFTIEPMINAGRAGTTVMRDGWTVVTKDRSLSAQWEHMVAV TDDSYELLTPWPDGTGRYEAP >Mature_260_residues AITYKTSEDIARLRISGRLAADVLAMIGEHVKPGVSTGELDAICHDYIVNTQKAIAANVGYMGFPKTVCTSVNAVVCHGI PDRSEVLKDGDIINIDVAVIKDGYFGDTSRMYTVGQSSTVAQQLIDTTYEAMLAGIRQVKPGATLGDVGHAIQQIAQREG FSIVRDYCGHGIGKVYHEDPQVLHYGQPGQGVRLKPGMVFTIEPMINAGRAGTTVMRDGWTVVTKDRSLSAQWEHMVAVT DDSYELLTPWPDGTGRYEAP
Specific function: Removes the amino-terminal methionine from nascent proteins [H]
COG id: COG0024
COG function: function code J; Methionine aminopeptidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M24A family [H]
Homologues:
Organism=Homo sapiens, GI164420681, Length=247, Percent_Identity=44.5344129554656, Blast_Score=215, Evalue=3e-56, Organism=Homo sapiens, GI40385867, Length=251, Percent_Identity=39.4422310756972, Blast_Score=188, Evalue=5e-48, Organism=Escherichia coli, GI1786364, Length=255, Percent_Identity=59.6078431372549, Blast_Score=330, Evalue=6e-92, Organism=Escherichia coli, GI1788728, Length=211, Percent_Identity=26.0663507109005, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1789275, Length=224, Percent_Identity=28.125, Blast_Score=65, Evalue=7e-12, Organism=Caenorhabditis elegans, GI71996291, Length=252, Percent_Identity=38.8888888888889, Blast_Score=187, Evalue=5e-48, Organism=Saccharomyces cerevisiae, GI6323273, Length=242, Percent_Identity=41.7355371900826, Blast_Score=205, Evalue=5e-54, Organism=Drosophila melanogaster, GI21355531, Length=249, Percent_Identity=39.7590361445783, Blast_Score=193, Evalue=8e-50, Organism=Drosophila melanogaster, GI24583427, Length=244, Percent_Identity=38.9344262295082, Blast_Score=187, Evalue=7e-48,
Paralogues:
None
Copy number: 3,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001714 - InterPro: IPR000994 - InterPro: IPR002467 [H]
Pfam domain/function: PF00557 Peptidase_M24 [H]
EC number: =3.4.11.18 [H]
Molecular weight: Translated: 28287; Mature: 28155
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: PS00680 MAP_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAITYKTSEDIARLRISGRLAADVLAMIGEHVKPGVSTGELDAICHDYIVNTQKAIAANV CEEEECCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHCC GYMGFPKTVCTSVNAVVCHGIPDRSEVLKDGDIINIDVAVIKDGYFGDTSRMYTVGQSST CCCCCCHHHHHCCCEEEEECCCCHHHHHCCCCEEEEEEEEEECCCCCCCCEEEEECCCHH VAQQLIDTTYEAMLAGIRQVKPGATLGDVGHAIQQIAQREGFSIVRDYCGHGIGKVYHED HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCC PQVLHYGQPGQGVRLKPGMVFTIEPMINAGRAGTTVMRDGWTVVTKDRSLSAQWEHMVAV CCEEEECCCCCCEEECCCEEEEEECCCCCCCCCCEEEECCCEEEEECCCCCCCEEEEEEE TDDSYELLTPWPDGTGRYEAP ECCCCEEEECCCCCCCCCCCC >Mature Secondary Structure AITYKTSEDIARLRISGRLAADVLAMIGEHVKPGVSTGELDAICHDYIVNTQKAIAANV EEEECCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHCC GYMGFPKTVCTSVNAVVCHGIPDRSEVLKDGDIINIDVAVIKDGYFGDTSRMYTVGQSST CCCCCCHHHHHCCCEEEEECCCCHHHHHCCCCEEEEEEEEEECCCCCCCCEEEEECCCHH VAQQLIDTTYEAMLAGIRQVKPGATLGDVGHAIQQIAQREGFSIVRDYCGHGIGKVYHED HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCC PQVLHYGQPGQGVRLKPGMVFTIEPMINAGRAGTTVMRDGWTVVTKDRSLSAQWEHMVAV CCEEEECCCCCCEEECCCEEEEEECCCCCCCCCCEEEECCCEEEEECCCCCCCEEEEEEE TDDSYELLTPWPDGTGRYEAP ECCCCEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]