| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is livK [C]
Identifier: 186475355
GI number: 186475355
Start: 666197
End: 667396
Strand: Direct
Name: livK [C]
Synonym: Bphy_0588
Alternate gene names: 186475355
Gene position: 666197-667396 (Clockwise)
Preceding gene: 186475354
Following gene: 186475356
Centisome position: 19.15
GC content: 60.58
Gene sequence:
>1200_bases ATGCGAGTCAAGTTTGCTTGTGCCGTGTCTATCGCGGCCGCGGTTGCGCTGACCGCGTGCGGCAAAAAGAACGATGGCGA AGCGGACAAGAGCGCGTCGGCTGCGGTCGCAGCGTCGGCGGCGCCCGCAAGCGAAGTGACGATCGTGAAGATCGGTCATG CGGCCCCATTAACGGGCGGCATCGCACATCTGGGTAAGGACAATGAAAACGGGGCGCGTCTCGCTATTGAAGAGATCAAC GCGCAGGGATTAACCATCGACGGTCGCAAGATCCAGTTGGAACTCGACGCACAGGACGACGCGGGCGATCCGAAAACGGG CACGCAGGTCGCGCAGAAACTGGTGGACGATCATGTAGTGGCTGTAGTCGGGCACCTGAATTCGGGCGTATCGATTCCAG CTTCGAAGATATATAGCGACGCGGGCATTGTGCAGATCTCCCCGTCCTCGACGAATCCGGCGTACACGCGACAAGGCTTC AAGACGACCTACCGGGTCGTCGCGACCGATGCGCAGCAGGGTCCGGCATTGGCGAATTACGCGACGAAAGCACTCGGCGC GAAACGGATCGCGGTCGTCGACGACGCGACTGCCTATGGCAAGGGTCTCGCTGACGAGTTCGCGAAGACGGCGGAAGCGG GCGGCGCCAAGATCGTGGCGCGCGAGGCGACCAATGACCGGGCCACGGATTTCCGGGCCATCCTCACAAAGATTAAAAGT GCCCAGCCGGACGCCATCATGTTCGGCGGCATGGATGCAACGGGCGGGCCGTTTGCGAAACAGGCAGCGGCGCTCGGAAT CAGGGCAAAAATCCTTGGCGGCGACGGCGTGTGCACCGACAAGGTAGGGGAACTGGCGGGCAGTGCCGTCCAGAACCTCG TGTGTTCGGAAGCGGGCCTTGCGCTTTCGAAGATGGAAAGGGGAGCGGACTTCGAGAAGAAGTACGACGCACGCTTCCAC ACGCCGGTGCAGATTTACGCGCCGTTCACGTATGACGCTGTGTACGTGATCGTCGATGCAATGAAGCGCGCCAATTCTAT CGAGCCGCCCAAGGTGCTCGCTGCGATGCCTTCGACCGATTACACAGGTGTGATCGGCCACATCGCATTCGACGACAAGG GCGACCTGAAAGAAGGCGCCATTACGCTTTACGACTTCAAGGACGGCAAGAAAGCGGTCCTCGACGTCGTGAAGATGTAA
Upstream 100 bases:
>100_bases ACAATATTGCCCGTCGCAGAATTGGAGTTACAATGCGCGCGTTCTCAGGGCTAGAGCGCCTTGAAACGCCAGATTTTGCA AGGCGCAGGAGACCTATTTA
Downstream 100 bases:
>100_bases TGGCGGGACGTACAGCCTGACGGCACCGGACCATCCGACGGTGCCGTTTTTGCATCCGCGTCGAGCGCGCGGGCCGCTGC AACCCAGCGGCCACGAGCGC
Product: extracellular ligand-binding receptor
Products: ADP; phosphate; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 399; Mature: 399
Protein sequence:
>399_residues MRVKFACAVSIAAAVALTACGKKNDGEADKSASAAVAASAAPASEVTIVKIGHAAPLTGGIAHLGKDNENGARLAIEEIN AQGLTIDGRKIQLELDAQDDAGDPKTGTQVAQKLVDDHVVAVVGHLNSGVSIPASKIYSDAGIVQISPSSTNPAYTRQGF KTTYRVVATDAQQGPALANYATKALGAKRIAVVDDATAYGKGLADEFAKTAEAGGAKIVAREATNDRATDFRAILTKIKS AQPDAIMFGGMDATGGPFAKQAAALGIRAKILGGDGVCTDKVGELAGSAVQNLVCSEAGLALSKMERGADFEKKYDARFH TPVQIYAPFTYDAVYVIVDAMKRANSIEPPKVLAAMPSTDYTGVIGHIAFDDKGDLKEGAITLYDFKDGKKAVLDVVKM
Sequences:
>Translated_399_residues MRVKFACAVSIAAAVALTACGKKNDGEADKSASAAVAASAAPASEVTIVKIGHAAPLTGGIAHLGKDNENGARLAIEEIN AQGLTIDGRKIQLELDAQDDAGDPKTGTQVAQKLVDDHVVAVVGHLNSGVSIPASKIYSDAGIVQISPSSTNPAYTRQGF KTTYRVVATDAQQGPALANYATKALGAKRIAVVDDATAYGKGLADEFAKTAEAGGAKIVAREATNDRATDFRAILTKIKS AQPDAIMFGGMDATGGPFAKQAAALGIRAKILGGDGVCTDKVGELAGSAVQNLVCSEAGLALSKMERGADFEKKYDARFH TPVQIYAPFTYDAVYVIVDAMKRANSIEPPKVLAAMPSTDYTGVIGHIAFDDKGDLKEGAITLYDFKDGKKAVLDVVKM >Mature_399_residues MRVKFACAVSIAAAVALTACGKKNDGEADKSASAAVAASAAPASEVTIVKIGHAAPLTGGIAHLGKDNENGARLAIEEIN AQGLTIDGRKIQLELDAQDDAGDPKTGTQVAQKLVDDHVVAVVGHLNSGVSIPASKIYSDAGIVQISPSSTNPAYTRQGF KTTYRVVATDAQQGPALANYATKALGAKRIAVVDDATAYGKGLADEFAKTAEAGGAKIVAREATNDRATDFRAILTKIKS AQPDAIMFGGMDATGGPFAKQAAALGIRAKILGGDGVCTDKVGELAGSAVQNLVCSEAGLALSKMERGADFEKKYDARFH TPVQIYAPFTYDAVYVIVDAMKRANSIEPPKVLAAMPSTDYTGVIGHIAFDDKGDLKEGAITLYDFKDGKKAVLDVVKM
Specific function: Component of an amino-acid transport system (Potential) [H]
COG id: COG0683
COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the leucine-binding protein family [H]
Homologues:
Organism=Escherichia coli, GI1789867, Length=342, Percent_Identity=31.5789473684211, Blast_Score=172, Evalue=3e-44, Organism=Escherichia coli, GI48994941, Length=338, Percent_Identity=28.698224852071, Blast_Score=155, Evalue=5e-39,
Paralogues:
None
Copy number: 240 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001828 - InterPro: IPR000709 [H]
Pfam domain/function: PF01094 ANF_receptor [H]
EC number: NA
Molecular weight: Translated: 41316; Mature: 41316
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVKFACAVSIAAAVALTACGKKNDGEADKSASAAVAASAAPASEVTIVKIGHAAPLTGG CCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHEECCCCCCCEEEEEECCCCCCCCC IAHLGKDNENGARLAIEEINAQGLTIDGRKIQLELDAQDDAGDPKTGTQVAQKLVDDHVV HHHCCCCCCCCCEEEEEECCCCCEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHE AVVGHLNSGVSIPASKIYSDAGIVQISPSSTNPAYTRQGFKTTYRVVATDAQQGPALANY EEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHCCCCEEEEEEEECCCCCCHHHHH ATKALGAKRIAVVDDATAYGKGLADEFAKTAEAGGAKIVAREATNDRATDFRAILTKIKS HHHHCCCCEEEEEECCHHHCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHC AQPDAIMFGGMDATGGPFAKQAAALGIRAKILGGDGVCTDKVGELAGSAVQNLVCSEAGL CCCCEEEEECCCCCCCCHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH ALSKMERGADFEKKYDARFHTPVQIYAPFTYDAVYVIVDAMKRANSIEPPKVLAAMPSTD HHHHHHCCCCCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCC YTGVIGHIAFDDKGDLKEGAITLYDFKDGKKAVLDVVKM CCEEEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHCC >Mature Secondary Structure MRVKFACAVSIAAAVALTACGKKNDGEADKSASAAVAASAAPASEVTIVKIGHAAPLTGG CCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHEECCCCCCCEEEEEECCCCCCCCC IAHLGKDNENGARLAIEEINAQGLTIDGRKIQLELDAQDDAGDPKTGTQVAQKLVDDHVV HHHCCCCCCCCCEEEEEECCCCCEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHE AVVGHLNSGVSIPASKIYSDAGIVQISPSSTNPAYTRQGFKTTYRVVATDAQQGPALANY EEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHCCCCEEEEEEEECCCCCCHHHHH ATKALGAKRIAVVDDATAYGKGLADEFAKTAEAGGAKIVAREATNDRATDFRAILTKIKS HHHHCCCCEEEEEECCHHHCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHC AQPDAIMFGGMDATGGPFAKQAAALGIRAKILGGDGVCTDKVGELAGSAVQNLVCSEAGL CCCCEEEEECCCCCCCCHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH ALSKMERGADFEKKYDARFHTPVQIYAPFTYDAVYVIVDAMKRANSIEPPKVLAAMPSTD HHHHHHCCCCCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCC YTGVIGHIAFDDKGDLKEGAITLYDFKDGKKAVLDVVKM CCEEEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA