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The map label for this gene is yhjC [H]

Identifier: 186475112

GI number: 186475112

Start: 387038

End: 387943

Strand: Direct

Name: yhjC [H]

Synonym: Bphy_0343

Alternate gene names: 186475112

Gene position: 387038-387943 (Clockwise)

Preceding gene: 186475110

Following gene: 186475114

Centisome position: 11.12

GC content: 66.78

Gene sequence:

>906_bases
ATGGACCGTTTTCAGGAAATGCAGGTGTTCGTCCGCATCGCCGAGCGGCAAAGCTTCACGCGTGCCGCCGACGATCTGCA
CATCCCGCGCGCCACCGTCACGAATCTGATGAAGCGGATGGAAGCACGGCTCGGAGCGCGGCTGCTCGAGCGCACGACGC
GCACCGTGCGCCTCACTCACGACGGCGAAGCGTATTACGGCCGCTGCGTGCGCCTGCTCGCGGACATGGAGGAAGCCGAG
GGCTCGTTTCGCGATGCCGCGCCCAAGGGCCTGCTGCGCGTGAATTTGCAAGGCACGCTCGCACGCCACTTCGTCGTGCC
GGCGCTGCCCGCGTTTTTGTCACGCTATCCGGGCATCGAGCTGCATATCGGCGAGGACGATCGGCTGGTCGATCTGGTGC
GCGAGGGCGTCGATTGCGTACTGCGCGCGGGCAATCTGCAGGATTCGTCGATGGTCGGGCGGCGCGTCGCGCGGCTCGAA
CAGGTGACCGTGGCGAGCCCGGCGTATCTCGAACGCCACGGCATGCCCTGCAGCCCCGACGCACTCGCGATGCATTGCGC
CGTCAACTACGTGTCGAGCGCAACGGGTCATGCGCTGCCGCTCGAATTCACCGTCGACGAGCGGGTGGTCGAGGTGAAGC
TGGAGGCGATCGTGTCCGTGACGGGCACCGATCTCTACAGCGGCTCGGCCGTCGCAGGACTCGGGCTCGTGCAGGTGCCG
CGCTATCGCGTGCAGAACGAGATTGCTGCGGGCAGCCTCGTCGTCGTGCTGCCGCAGTTTCCGCCGCCGCCGATGCCCGT
CACCGTGTTGTATCCGCAAAGCCGCCAGTTGTCGTCGCGCGTGCGAGTGTTTGCGCAATGGCTGCGCGAGATCTTCGAGG
CCGCAGGCGGACTCGAGGTCGGCTGA

Upstream 100 bases:

>100_bases
AGAAGGATGATGGGATATTTCGGTAAAGAGATAATCTGGTGAAACTGGTTATCATCGTTCCATTCACTTTAACAATCGAG
CCACCCGCCGCAACTCGTCA

Downstream 100 bases:

>100_bases
CGCGAATCATCGAATGCGCTCGAGATGCGTGAGCGCATCGCGCATCGGATCGCTGGATGCGACGATGGGACCCGTCAGCG
GGGTGTCGAGATCGACGATC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDRFQEMQVFVRIAERQSFTRAADDLHIPRATVTNLMKRMEARLGARLLERTTRTVRLTHDGEAYYGRCVRLLADMEEAE
GSFRDAAPKGLLRVNLQGTLARHFVVPALPAFLSRYPGIELHIGEDDRLVDLVREGVDCVLRAGNLQDSSMVGRRVARLE
QVTVASPAYLERHGMPCSPDALAMHCAVNYVSSATGHALPLEFTVDERVVEVKLEAIVSVTGTDLYSGSAVAGLGLVQVP
RYRVQNEIAAGSLVVVLPQFPPPPMPVTVLYPQSRQLSSRVRVFAQWLREIFEAAGGLEVG

Sequences:

>Translated_301_residues
MDRFQEMQVFVRIAERQSFTRAADDLHIPRATVTNLMKRMEARLGARLLERTTRTVRLTHDGEAYYGRCVRLLADMEEAE
GSFRDAAPKGLLRVNLQGTLARHFVVPALPAFLSRYPGIELHIGEDDRLVDLVREGVDCVLRAGNLQDSSMVGRRVARLE
QVTVASPAYLERHGMPCSPDALAMHCAVNYVSSATGHALPLEFTVDERVVEVKLEAIVSVTGTDLYSGSAVAGLGLVQVP
RYRVQNEIAAGSLVVVLPQFPPPPMPVTVLYPQSRQLSSRVRVFAQWLREIFEAAGGLEVG
>Mature_301_residues
MDRFQEMQVFVRIAERQSFTRAADDLHIPRATVTNLMKRMEARLGARLLERTTRTVRLTHDGEAYYGRCVRLLADMEEAE
GSFRDAAPKGLLRVNLQGTLARHFVVPALPAFLSRYPGIELHIGEDDRLVDLVREGVDCVLRAGNLQDSSMVGRRVARLE
QVTVASPAYLERHGMPCSPDALAMHCAVNYVSSATGHALPLEFTVDERVVEVKLEAIVSVTGTDLYSGSAVAGLGLVQVP
RYRVQNEIAAGSLVVVLPQFPPPPMPVTVLYPQSRQLSSRVRVFAQWLREIFEAAGGLEVG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=38.6206896551724, Blast_Score=222, Evalue=2e-59,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=32.4324324324324, Blast_Score=160, Evalue=6e-41,
Organism=Escherichia coli, GI1789639, Length=302, Percent_Identity=30.794701986755, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787589, Length=287, Percent_Identity=31.3588850174216, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=30.3754266211604, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=25.6944444444444, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789173, Length=285, Percent_Identity=27.719298245614, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=24.7386759581882, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788706, Length=303, Percent_Identity=24.0924092409241, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI157672245, Length=139, Percent_Identity=31.6546762589928, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33262; Mature: 33262

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFQEMQVFVRIAERQSFTRAADDLHIPRATVTNLMKRMEARLGARLLERTTRTVRLTH
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
DGEAYYGRCVRLLADMEEAEGSFRDAAPKGLLRVNLQGTLARHFVVPALPAFLSRYPGIE
CCCHHHHHHHHHHHHHHHHCCCHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCE
LHIGEDDRLVDLVREGVDCVLRAGNLQDSSMVGRRVARLEQVTVASPAYLERHGMPCSPD
EEECCCHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHH
ALAMHCAVNYVSSATGHALPLEFTVDERVVEVKLEAIVSVTGTDLYSGSAVAGLGLVQVP
HHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHEECCCCCCCCCHHHCCCHHHCC
RYRVQNEIAAGSLVVVLPQFPPPPMPVTVLYPQSRQLSSRVRVFAQWLREIFEAAGGLEV
HHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
G
C
>Mature Secondary Structure
MDRFQEMQVFVRIAERQSFTRAADDLHIPRATVTNLMKRMEARLGARLLERTTRTVRLTH
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
DGEAYYGRCVRLLADMEEAEGSFRDAAPKGLLRVNLQGTLARHFVVPALPAFLSRYPGIE
CCCHHHHHHHHHHHHHHHHCCCHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCE
LHIGEDDRLVDLVREGVDCVLRAGNLQDSSMVGRRVARLEQVTVASPAYLERHGMPCSPD
EEECCCHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHH
ALAMHCAVNYVSSATGHALPLEFTVDERVVEVKLEAIVSVTGTDLYSGSAVAGLGLVQVP
HHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHEECCCCCCCCCHHHCCCHHHCC
RYRVQNEIAAGSLVVVLPQFPPPPMPVTVLYPQSRQLSSRVRVFAQWLREIFEAAGGLEV
HHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]