| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186474966
Identifier: 186474966
GI number: 186474966
Start: 221102
End: 222295
Strand: Direct
Name: 186474966
Synonym: Bphy_0197
Alternate gene names: NA
Gene position: 221102-222295 (Clockwise)
Preceding gene: 186474965
Following gene: 186474967
Centisome position: 6.35
GC content: 63.65
Gene sequence:
>1194_bases ATGCCGCGATACGGGACGTTTGCATTTTCAAGCTCGCGCCACAGCGCTTCGAAGCGGCGCACGATGCTCGCCGCCGCGCT TTCCGCTTTGCCGGGAGTCGCGCTCGCTCAGGTGAAGATCGGCCTTGTGCTGTCGCTGACGGGACCGGCTGCATCGCTCG GCATTCCGGCGCGCGATACCGCGACGCTGTTTCCGAAAGAGATCGCCGGTCAGAAAGTCGATTACATCGTGCTCGACGAT GCGTCCGATACGACACAAGCCGTACAGGACACGAAAAAGCTCATTTCCGAACATCACGTCGATGCGATCATCGGCTCGTC AATCACGCCGAACTCGCTCGCGATGATCGACGTCATTGCCGAAGGTGAAACGCCCGCGATCTCGCTGGCGTCGTCGGCGA AGATCATCGAGCCCGTCGACGCTAAACGGCGCTGGATGTTCAAGACCCCGCAGACGGACGCGATGATGGCCTCCGCGATC ACCGGGCACGCGAGCCAGCATGGCGTGAAGACGCTTGCGTACATCGGTCAGGCGGACGCGCTCGGCGAAACCTTCTATGC GGAAGTCGCGAAGTTCGCGCAGATTCACCACATCGGCGTGGTGGCCAACGAGCGATTCAATCGCACGGACCCGAGCGTCA CCGGCCAGATTCTGAAGATCATGGCGGCGAACCCGGATGCTGTCGTCGTGGGCGCGGCGGGCACGCCGGCCGCGCTGCCG CCGAAGACGCTGATCGGCCGTGGCTACAAGGGCAAGATCTATCACAACCACGGCGTGGGCAATAACGACTTCCTGCGCGT GTGCGGAACCGACTGCAACGGCACCTTCCTGCCCGCGAGCCCGGTGCTCGTCGCAGCGCAGCTCCCTTCGGACTATGCTT CGAAGCGTCTGGCGCTCGATTACATCGCGCGCTTTGAGAAGCTGCGCGGTCCGGGCAGTGTGTCGGCGTTCGGCGCCTAT GCGTGGGACGCGAGCATGCTGCTCGACAACGCGATTCCCATTGCTCTGAAAGCGGCCGCGCCCGGCACGGCCGAGTTTCG CCGCGCGCTGCGCGATGCGCTGGAAGCGACGAAAGGACTGGCCGACACGAACGGTGTCGTCAACATGAGCGCGACCGATC ACCTTGGCCTCGATCAGCGCGCGCGCGTGATGGTCGAGATCAGCAACGGCAAGTGGGTATATCAGCCGCGCTGA
Upstream 100 bases:
>100_bases CGAGCCTCGTGCGCTGATTCGCGCACATTGCGGACAGCACATGCAACACGCGCAACGGCAGCATCGCAGAAATGACAAGA AGCCAACTGGAGACAAAGGC
Downstream 100 bases:
>100_bases ACGCGGCGCTTTCGGGTGACGCAGCGTCGGCTGCGTCGCGCGCCTGATGTGTGGTCCGACGCCGACGCGTCGCTTCTTCG GATGTCTGCCATGTCTCACG
Product: extracellular ligand-binding receptor
Products: NA
Alternate protein names: Branched-Chain Amino Acid ABC Transporter; Branched-Chain Amino Acid Transporter; Amino Acid ABC Transporter Periplasmic Protein
Number of amino acids: Translated: 397; Mature: 396
Protein sequence:
>397_residues MPRYGTFAFSSSRHSASKRRTMLAAALSALPGVALAQVKIGLVLSLTGPAASLGIPARDTATLFPKEIAGQKVDYIVLDD ASDTTQAVQDTKKLISEHHVDAIIGSSITPNSLAMIDVIAEGETPAISLASSAKIIEPVDAKRRWMFKTPQTDAMMASAI TGHASQHGVKTLAYIGQADALGETFYAEVAKFAQIHHIGVVANERFNRTDPSVTGQILKIMAANPDAVVVGAAGTPAALP PKTLIGRGYKGKIYHNHGVGNNDFLRVCGTDCNGTFLPASPVLVAAQLPSDYASKRLALDYIARFEKLRGPGSVSAFGAY AWDASMLLDNAIPIALKAAAPGTAEFRRALRDALEATKGLADTNGVVNMSATDHLGLDQRARVMVEISNGKWVYQPR
Sequences:
>Translated_397_residues MPRYGTFAFSSSRHSASKRRTMLAAALSALPGVALAQVKIGLVLSLTGPAASLGIPARDTATLFPKEIAGQKVDYIVLDD ASDTTQAVQDTKKLISEHHVDAIIGSSITPNSLAMIDVIAEGETPAISLASSAKIIEPVDAKRRWMFKTPQTDAMMASAI TGHASQHGVKTLAYIGQADALGETFYAEVAKFAQIHHIGVVANERFNRTDPSVTGQILKIMAANPDAVVVGAAGTPAALP PKTLIGRGYKGKIYHNHGVGNNDFLRVCGTDCNGTFLPASPVLVAAQLPSDYASKRLALDYIARFEKLRGPGSVSAFGAY AWDASMLLDNAIPIALKAAAPGTAEFRRALRDALEATKGLADTNGVVNMSATDHLGLDQRARVMVEISNGKWVYQPR >Mature_396_residues PRYGTFAFSSSRHSASKRRTMLAAALSALPGVALAQVKIGLVLSLTGPAASLGIPARDTATLFPKEIAGQKVDYIVLDDA SDTTQAVQDTKKLISEHHVDAIIGSSITPNSLAMIDVIAEGETPAISLASSAKIIEPVDAKRRWMFKTPQTDAMMASAIT GHASQHGVKTLAYIGQADALGETFYAEVAKFAQIHHIGVVANERFNRTDPSVTGQILKIMAANPDAVVVGAAGTPAALPP KTLIGRGYKGKIYHNHGVGNNDFLRVCGTDCNGTFLPASPVLVAAQLPSDYASKRLALDYIARFEKLRGPGSVSAFGAYA WDASMLLDNAIPIALKAAAPGTAEFRRALRDALEATKGLADTNGVVNMSATDHLGLDQRARVMVEISNGKWVYQPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41988; Mature: 41857
Theoretical pI: Translated: 9.39; Mature: 9.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRYGTFAFSSSRHSASKRRTMLAAALSALPGVALAQVKIGLVLSLTGPAASLGIPARDT CCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCHHCCCCCCCC ATLFPKEIAGQKVDYIVLDDASDTTQAVQDTKKLISEHHVDAIIGSSITPNSLAMIDVIA HHCCCHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE EGETPAISLASSAKIIEPVDAKRRWMFKTPQTDAMMASAITGHASQHGVKTLAYIGQADA CCCCCEEEECCCCCEECCCCCCCCEEECCCCHHHHHHHHHHCCCHHHCHHHHHHHCCHHH LGETFYAEVAKFAQIHHIGVVANERFNRTDPSVTGQILKIMAANPDAVVVGAAGTPAALP HHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHEEEECCCCEEEEECCCCCCCCC PKTLIGRGYKGKIYHNHGVGNNDFLRVCGTDCNGTFLPASPVLVAAQLPSDYASKRLALD CHHHHCCCCCCEEEECCCCCCCCEEEEECCCCCCEECCCCCEEEEEECCCHHHHHHHHHH YIARFEKLRGPGSVSAFGAYAWDASMLLDNAIPIALKAAAPGTAEFRRALRDALEATKGL HHHHHHHHCCCCCCCCCEEHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCC ADTNGVVNMSATDHLGLDQRARVMVEISNGKWVYQPR CCCCCEEEECCCCCCCCCCCCEEEEEECCCEEEECCC >Mature Secondary Structure PRYGTFAFSSSRHSASKRRTMLAAALSALPGVALAQVKIGLVLSLTGPAASLGIPARDT CCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCHHCCCCCCCC ATLFPKEIAGQKVDYIVLDDASDTTQAVQDTKKLISEHHVDAIIGSSITPNSLAMIDVIA HHCCCHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE EGETPAISLASSAKIIEPVDAKRRWMFKTPQTDAMMASAITGHASQHGVKTLAYIGQADA CCCCCEEEECCCCCEECCCCCCCCEEECCCCHHHHHHHHHHCCCHHHCHHHHHHHCCHHH LGETFYAEVAKFAQIHHIGVVANERFNRTDPSVTGQILKIMAANPDAVVVGAAGTPAALP HHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHEEEECCCCEEEEECCCCCCCCC PKTLIGRGYKGKIYHNHGVGNNDFLRVCGTDCNGTFLPASPVLVAAQLPSDYASKRLALD CHHHHCCCCCCEEEECCCCCCCCEEEEECCCCCCEECCCCCEEEEEECCCHHHHHHHHHH YIARFEKLRGPGSVSAFGAYAWDASMLLDNAIPIALKAAAPGTAEFRRALRDALEATKGL HHHHHHHHCCCCCCCCCEEHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCC ADTNGVVNMSATDHLGLDQRARVMVEISNGKWVYQPR CCCCCEEEECCCCCCCCCCCCEEEEEECCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA