| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is yciR [C]
Identifier: 183222770
GI number: 183222770
Start: 3548162
End: 3550618
Strand: Reverse
Name: yciR [C]
Synonym: LEPBI_I3429
Alternate gene names: 183222770
Gene position: 3550618-3548162 (Counterclockwise)
Preceding gene: 183222775
Following gene: 183222769
Centisome position: 98.64
GC content: 37.65
Gene sequence:
>2457_bases ATGTCACTGAAGCAGATCACAATCTATATTGAAGAATCTGAGCTGAATTTCTTTAACAGGCTATTACGGGACATAACAAA CATCGATACATGCCATGTGCATAGTTTCCCATCGATCTTAAAAATCAAACCTGGAACCATACAAGACTCTGCCGTTTTTT TATTTTGGAATGATTCCAATGCGATGGAGAAACAAAAATTTATTTTTGAACACTTTCCAGAATCACCGTATGTCATTTTA TCCACAAATCTTCTCAGTCCCGAAGATCTCTCGCAAGTGGCACACCCAACATTCTTACATTTAGCAGAACCAACTTACTC GGTGGGTACTTTAGATTTAGTTTTAAACTTCGCAGAACGCCTGATAGAAGACATGAACCGGTCAATTGCTTATGACAAAA TCCGTGAAAAGGTTGTGGTCTTAGAAAACGTCTTTGAAGAATCGTTAGACGTATTGATGCAAATAGATCCAAACACCAAA CATATCATCAATGCGAACAAACAAGCCGTCGTTGTTTTGGAATATGCGCTGGAAGAAATTGTTGGCAAAGAGTTTTCATA CTTTATGCCACCAGTGGAAGTGGATGAAGACGCTGAGTTTGAAGGAAATTTAATCGAAAGCACGGCCTTACGAACCAAAT CAGGCAGGTTGATACCCACAGAGTCCTCGTTTCGATTGTTTCCTGTGAATGGTAAGATGGCGATTTGGGCCACCTTTCGT GATATCACGGATCGTAAACGTTCCCAAGAACAAGTCAAAAACCAAAAAGCTTTTTATGAATTCATTTTGGATAATTTAGA TTCAGACATTGCCGTATTAAATTCCAATTTTGAATATGAGTATACAAATCCAGTATTTTTATCCAATCGGGAAATTCGTA AGTGGTTGTACAAAAAAACAGATGTTGATCTAGCTGAAAAGTTGGACCTTCCTCAAGAATTTTATGAACGTAGAAAAAAA TTCTTAGATATTGCCGCTAAAAATAATGAAATTGTCGAATTTGAAGAACTCATTCAGGACCAAAACGACAAAGTAACCTA TTTACTTAGAAAATACATACCGATTGATGACTCAGAAACCAATCAAAAACGGTTTATTAGTTTTGGAGTTGATATCACAG AACGAAAGTTATCCGAAGAAAGGATCACCTATCTTGCTTACTACGATGCGTTGACAGGTTTAGCAAACCGAACTTTATTC ATCGACCATGCCAACCAAGCTCTTAAAAATCATAAATCGACGGAAACCTTACTCGCCTTCTATTTTTTTGATATCGATAA TTTTAAATTCATCAATGACAGTTTGGGTCATACAAAAGGTGATATTTTATTACAGATGGTCGGAGCCAGACTCAAACGAG TGATGACAGAAGTGGATACGGTGGCTCGTTTTGGTGGAGATGAATTTGCGATTCTAAAAGTGGATGTTTCGAATAAAAGT TCAGCCGCTGAATTTGCTCAGAAGATATTAGATATATTAAGCCAACCGTTTCATATTATGGGTCGCGATTTGTTCACAAC GATTAGTATGGGAATTGCCTTATCTCCGAATGATGGAGTGACTTCGGCAGAATTATTAAAAAATTCAGACATGGCAATGT ATAAGGCGAAGGAACTTGGCCGAAATAATTATAAATTTTATACCAATGAACTGATATTACGTTCCGAAAAACGATTGTAC ATCGAAAATTCACTTCGTAAAGCAATTCAAAACGAAGAATTACTCTTATTCTTCCAACCAAAAATATCGACCATCACCAA CCAAGTTTGTGGGGCAGAAGCTCTCATCCGATGGAAGCACCCGGAACGTGGTTGGGTTCCACCAATTGAATTTATCCCGG TGGCAGAAGACTCAGGGATCATAGAAAGGATTGGGGATTGGGTTTTGGAAGAAGCTTGTCGTTTGAAAAAACAATGGAGT GAAAAAAATCTCCCCAGTTTTCCATTGAGTATCAATGTGAGTGGAAAACAACTTGCACGCGCTAACTGGTCGCACCGAGT GCAGGCAACGATTTTACAATACGGAATCAATCCAGAAGAAATTGAATTGGAACTCACTGAAAGTTCTATCATGGAAAATC CCGAAAAAAGTATCGAGGCCTTTGAATATCTCTCAGAACTAGGAATTAAAGTTTCTATTGATGATTTTGGAACTGGGTAT AGTTCGTTAAGTTATTTAAAAAAGATCAATGCTGATGTGATAAAAATTGATCGTTCTTTCGTAGTGGACTTGGAACTGAA TGAAGATGATAGAGCCATTTGTAAAGCCATCATCAATATGGCACATTCATTGGGACTTGAAGTGATTGCAGAAGGAGTGG AAAATCCGGCCCAAAGGGATTTGTTACATGATTTAGGATGCCATATGATCCAAGGTTATTTGTATAGTAAACCCCTCCCT GAAGATGAATTTGTTGTCTTTGTGCAAAAATTTAACGAATCTGCCAAAACAAAATAG
Upstream 100 bases:
>100_bases ACAACACGCGAATGGGGAACCTTGCTTGTGCATCGCATAGGCGTATGGTTAAAAAAATCAATTGTAAGGAAAAGGATTTT TCGTCTACTATGCCTAGGTC
Downstream 100 bases:
>100_bases CCGAAATTTTGAATGATGGTTCGTTCTATTTCTATCCTATCCTTCATTTTATTTTTTGTCCAAGCCGTTCCCGCAGAATC TCGCGAAGTCAAAAAGAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 818; Mature: 817
Protein sequence:
>818_residues MSLKQITIYIEESELNFFNRLLRDITNIDTCHVHSFPSILKIKPGTIQDSAVFLFWNDSNAMEKQKFIFEHFPESPYVIL STNLLSPEDLSQVAHPTFLHLAEPTYSVGTLDLVLNFAERLIEDMNRSIAYDKIREKVVVLENVFEESLDVLMQIDPNTK HIINANKQAVVVLEYALEEIVGKEFSYFMPPVEVDEDAEFEGNLIESTALRTKSGRLIPTESSFRLFPVNGKMAIWATFR DITDRKRSQEQVKNQKAFYEFILDNLDSDIAVLNSNFEYEYTNPVFLSNREIRKWLYKKTDVDLAEKLDLPQEFYERRKK FLDIAAKNNEIVEFEELIQDQNDKVTYLLRKYIPIDDSETNQKRFISFGVDITERKLSEERITYLAYYDALTGLANRTLF IDHANQALKNHKSTETLLAFYFFDIDNFKFINDSLGHTKGDILLQMVGARLKRVMTEVDTVARFGGDEFAILKVDVSNKS SAAEFAQKILDILSQPFHIMGRDLFTTISMGIALSPNDGVTSAELLKNSDMAMYKAKELGRNNYKFYTNELILRSEKRLY IENSLRKAIQNEELLLFFQPKISTITNQVCGAEALIRWKHPERGWVPPIEFIPVAEDSGIIERIGDWVLEEACRLKKQWS EKNLPSFPLSINVSGKQLARANWSHRVQATILQYGINPEEIELELTESSIMENPEKSIEAFEYLSELGIKVSIDDFGTGY SSLSYLKKINADVIKIDRSFVVDLELNEDDRAICKAIINMAHSLGLEVIAEGVENPAQRDLLHDLGCHMIQGYLYSKPLP EDEFVVFVQKFNESAKTK
Sequences:
>Translated_818_residues MSLKQITIYIEESELNFFNRLLRDITNIDTCHVHSFPSILKIKPGTIQDSAVFLFWNDSNAMEKQKFIFEHFPESPYVIL STNLLSPEDLSQVAHPTFLHLAEPTYSVGTLDLVLNFAERLIEDMNRSIAYDKIREKVVVLENVFEESLDVLMQIDPNTK HIINANKQAVVVLEYALEEIVGKEFSYFMPPVEVDEDAEFEGNLIESTALRTKSGRLIPTESSFRLFPVNGKMAIWATFR DITDRKRSQEQVKNQKAFYEFILDNLDSDIAVLNSNFEYEYTNPVFLSNREIRKWLYKKTDVDLAEKLDLPQEFYERRKK FLDIAAKNNEIVEFEELIQDQNDKVTYLLRKYIPIDDSETNQKRFISFGVDITERKLSEERITYLAYYDALTGLANRTLF IDHANQALKNHKSTETLLAFYFFDIDNFKFINDSLGHTKGDILLQMVGARLKRVMTEVDTVARFGGDEFAILKVDVSNKS SAAEFAQKILDILSQPFHIMGRDLFTTISMGIALSPNDGVTSAELLKNSDMAMYKAKELGRNNYKFYTNELILRSEKRLY IENSLRKAIQNEELLLFFQPKISTITNQVCGAEALIRWKHPERGWVPPIEFIPVAEDSGIIERIGDWVLEEACRLKKQWS EKNLPSFPLSINVSGKQLARANWSHRVQATILQYGINPEEIELELTESSIMENPEKSIEAFEYLSELGIKVSIDDFGTGY SSLSYLKKINADVIKIDRSFVVDLELNEDDRAICKAIINMAHSLGLEVIAEGVENPAQRDLLHDLGCHMIQGYLYSKPLP EDEFVVFVQKFNESAKTK >Mature_817_residues SLKQITIYIEESELNFFNRLLRDITNIDTCHVHSFPSILKIKPGTIQDSAVFLFWNDSNAMEKQKFIFEHFPESPYVILS TNLLSPEDLSQVAHPTFLHLAEPTYSVGTLDLVLNFAERLIEDMNRSIAYDKIREKVVVLENVFEESLDVLMQIDPNTKH IINANKQAVVVLEYALEEIVGKEFSYFMPPVEVDEDAEFEGNLIESTALRTKSGRLIPTESSFRLFPVNGKMAIWATFRD ITDRKRSQEQVKNQKAFYEFILDNLDSDIAVLNSNFEYEYTNPVFLSNREIRKWLYKKTDVDLAEKLDLPQEFYERRKKF LDIAAKNNEIVEFEELIQDQNDKVTYLLRKYIPIDDSETNQKRFISFGVDITERKLSEERITYLAYYDALTGLANRTLFI DHANQALKNHKSTETLLAFYFFDIDNFKFINDSLGHTKGDILLQMVGARLKRVMTEVDTVARFGGDEFAILKVDVSNKSS AAEFAQKILDILSQPFHIMGRDLFTTISMGIALSPNDGVTSAELLKNSDMAMYKAKELGRNNYKFYTNELILRSEKRLYI ENSLRKAIQNEELLLFFQPKISTITNQVCGAEALIRWKHPERGWVPPIEFIPVAEDSGIIERIGDWVLEEACRLKKQWSE KNLPSFPLSINVSGKQLARANWSHRVQATILQYGINPEEIELELTESSIMENPEKSIEAFEYLSELGIKVSIDDFGTGYS SLSYLKKINADVIKIDRSFVVDLELNEDDRAICKAIINMAHSLGLEVIAEGVENPAQRDLLHDLGCHMIQGYLYSKPLPE DEFVVFVQKFNESAKTK
Specific function: Unknown
COG id: COG5001
COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 MHYT domain [H]
Homologues:
Organism=Escherichia coli, GI1787541, Length=492, Percent_Identity=36.1788617886179, Blast_Score=313, Evalue=2e-86, Organism=Escherichia coli, GI87081921, Length=433, Percent_Identity=33.0254041570439, Blast_Score=237, Evalue=2e-63, Organism=Escherichia coli, GI226510982, Length=467, Percent_Identity=29.3361884368308, Blast_Score=220, Evalue=3e-58, Organism=Escherichia coli, GI1790496, Length=259, Percent_Identity=34.7490347490347, Blast_Score=163, Evalue=4e-41, Organism=Escherichia coli, GI87081743, Length=260, Percent_Identity=34.6153846153846, Blast_Score=158, Evalue=1e-39, Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=34.0336134453782, Blast_Score=149, Evalue=6e-37, Organism=Escherichia coli, GI1787055, Length=247, Percent_Identity=36.0323886639676, Blast_Score=147, Evalue=3e-36, Organism=Escherichia coli, GI1788502, Length=254, Percent_Identity=32.2834645669291, Blast_Score=144, Evalue=2e-35, Organism=Escherichia coli, GI87081845, Length=246, Percent_Identity=32.9268292682927, Blast_Score=136, Evalue=5e-33, Organism=Escherichia coli, GI87081980, Length=255, Percent_Identity=31.3725490196078, Blast_Score=134, Evalue=3e-32, Organism=Escherichia coli, GI1788849, Length=253, Percent_Identity=32.4110671936759, Blast_Score=133, Evalue=6e-32, Organism=Escherichia coli, GI87082096, Length=250, Percent_Identity=34.8, Blast_Score=132, Evalue=9e-32, Organism=Escherichia coli, GI1788381, Length=585, Percent_Identity=23.7606837606838, Blast_Score=115, Evalue=1e-26, Organism=Escherichia coli, GI1788956, Length=155, Percent_Identity=36.7741935483871, Blast_Score=87, Evalue=4e-18, Organism=Escherichia coli, GI87081881, Length=173, Percent_Identity=35.8381502890173, Blast_Score=86, Evalue=9e-18, Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=31.4102564102564, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1787410, Length=120, Percent_Identity=35.8333333333333, Blast_Score=78, Evalue=3e-15, Organism=Escherichia coli, GI1786584, Length=183, Percent_Identity=31.6939890710383, Blast_Score=77, Evalue=5e-15, Organism=Escherichia coli, GI1789650, Length=427, Percent_Identity=20.3747072599532, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1787816, Length=191, Percent_Identity=29.3193717277487, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=28.8343558282209, Blast_Score=72, Evalue=2e-13, Organism=Escherichia coli, GI145693134, Length=271, Percent_Identity=28.7822878228782, Blast_Score=70, Evalue=6e-13, Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=28.9940828402367, Blast_Score=70, Evalue=8e-13, Organism=Escherichia coli, GI87081974, Length=150, Percent_Identity=32.6666666666667, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1787802, Length=169, Percent_Identity=30.1775147928994, Blast_Score=67, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR005330 [H]
Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]
EC number: NA
Molecular weight: Translated: 94122; Mature: 93991
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF ; PS00284 SERPIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLKQITIYIEESELNFFNRLLRDITNIDTCHVHSFPSILKIKPGTIQDSAVFLFWNDSN CCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCCEEEEEECCCC AMEKQKFIFEHFPESPYVILSTNLLSPEDLSQVAHPTFLHLAEPTYSVGTLDLVLNFAER CHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH LIEDMNRSIAYDKIREKVVVLENVFEESLDVLMQIDPNTKHIINANKQAVVVLEYALEEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEECCCCCEEEEHHHHHHHH VGKEFSYFMPPVEVDEDAEFEGNLIESTALRTKSGRLIPTESSFRLFPVNGKMAIWATFR HCCCHHHCCCCCCCCCCCCCCCCEEHHHHEECCCCCEEECCCCCEEEECCCCEEEEEEHH DITDRKRSQEQVKNQKAFYEFILDNLDSDIAVLNSNFEYEYTNPVFLSNREIRKWLYKKT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCEEECCHHHHHHHHHCC DVDLAEKLDLPQEFYERRKKFLDIAAKNNEIVEFEELIQDQNDKVTYLLRKYIPIDDSET CCCHHHHCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCHHHHHHHHHCCCCCCCC NQKRFISFGVDITERKLSEERITYLAYYDALTGLANRTLFIDHANQALKNHKSTETLLAF CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHCCCCHHHEEEE YFFDIDNFKFINDSLGHTKGDILLQMVGARLKRVMTEVDTVARFGGDEFAILKVDVSNKS EEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC SAAEFAQKILDILSQPFHIMGRDLFTTISMGIALSPNDGVTSAELLKNSDMAMYKAKELG CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEECCCCCCCHHHHHCCCCHHHHHHHHCC RNNYKFYTNELILRSEKRLYIENSLRKAIQNEELLLFFQPKISTITNQVCGAEALIRWKH CCCCEEEECEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCHHHEEECC PERGWVPPIEFIPVAEDSGIIERIGDWVLEEACRLKKQWSEKNLPSFPLSINVSGKQLAR CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHH ANWSHRVQATILQYGINPEEIELELTESSIMENPEKSIEAFEYLSELGIKVSIDDFGTGY CCCCHHHHHHHHHHCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEECCCCCCH SSLSYLKKINADVIKIDRSFVVDLELNEDDRAICKAIINMAHSLGLEVIAEGVENPAQRD HHHHHHHHCCCCEEEECCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH LLHDLGCHMIQGYLYSKPLPEDEFVVFVQKFNESAKTK HHHHHHHHHHHHHHHCCCCCCCHHEEEEEHHCCCCCCC >Mature Secondary Structure SLKQITIYIEESELNFFNRLLRDITNIDTCHVHSFPSILKIKPGTIQDSAVFLFWNDSN CCEEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCCEEEEEECCCC AMEKQKFIFEHFPESPYVILSTNLLSPEDLSQVAHPTFLHLAEPTYSVGTLDLVLNFAER CHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH LIEDMNRSIAYDKIREKVVVLENVFEESLDVLMQIDPNTKHIINANKQAVVVLEYALEEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEECCCCCEEEEHHHHHHHH VGKEFSYFMPPVEVDEDAEFEGNLIESTALRTKSGRLIPTESSFRLFPVNGKMAIWATFR HCCCHHHCCCCCCCCCCCCCCCCEEHHHHEECCCCCEEECCCCCEEEECCCCEEEEEEHH DITDRKRSQEQVKNQKAFYEFILDNLDSDIAVLNSNFEYEYTNPVFLSNREIRKWLYKKT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCEEECCHHHHHHHHHCC DVDLAEKLDLPQEFYERRKKFLDIAAKNNEIVEFEELIQDQNDKVTYLLRKYIPIDDSET CCCHHHHCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCHHHHHHHHHCCCCCCCC NQKRFISFGVDITERKLSEERITYLAYYDALTGLANRTLFIDHANQALKNHKSTETLLAF CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHCCCCHHHEEEE YFFDIDNFKFINDSLGHTKGDILLQMVGARLKRVMTEVDTVARFGGDEFAILKVDVSNKS EEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC SAAEFAQKILDILSQPFHIMGRDLFTTISMGIALSPNDGVTSAELLKNSDMAMYKAKELG CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEECCCCCCCHHHHHCCCCHHHHHHHHCC RNNYKFYTNELILRSEKRLYIENSLRKAIQNEELLLFFQPKISTITNQVCGAEALIRWKH CCCCEEEECEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCHHHEEECC PERGWVPPIEFIPVAEDSGIIERIGDWVLEEACRLKKQWSEKNLPSFPLSINVSGKQLAR CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHH ANWSHRVQATILQYGINPEEIELELTESSIMENPEKSIEAFEYLSELGIKVSIDDFGTGY CCCCHHHHHHHHHHCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEECCCCCCH SSLSYLKKINADVIKIDRSFVVDLELNEDDRAICKAIINMAHSLGLEVIAEGVENPAQRD HHHHHHHHCCCCEEEECCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH LLHDLGCHMIQGYLYSKPLPEDEFVVFVQKFNESAKTK HHHHHHHHHHHHHHHCCCCCCCHHEEEEEHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]