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The map label for this gene is csrA

Identifier: 183222555

GI number: 183222555

Start: 3326812

End: 3327051

Strand: Reverse

Name: csrA

Synonym: LEPBI_I3210

Alternate gene names: 183222555

Gene position: 3327051-3326812 (Counterclockwise)

Preceding gene: 183222556

Following gene: 183222554

Centisome position: 92.43

GC content: 35.83

Gene sequence:

>240_bases
GTGTTAGTTTTAGCGAGGAGAAGTAACCAATCCATTATGATTGGCGATGATATTGAAATTGTCATCGTTGATATCAAAGG
GGATCAAGTAAAGATTGGTGTCAAAGCTCCTAAAAATGTTTCTGTCCATCGTGCAGAAGTATACAAAGAAATCCAAGAAG
AGAACAAAAAAGCAGCTGGTACGAATATTAAACCGGAAGATTTAGGCAAGTTAGGAGACCTGTTTAAGAAAAAAACTTAA

Upstream 100 bases:

>100_bases
GGGAAAAGGCAAACAATGTATTTCCCGAGATGAAAACCACTCAATTCGAAAAAACATCATTGAGTCAATGGAAGAAATGT
CTTCCGAAAAGGTATAGCTC

Downstream 100 bases:

>100_bases
CTTGATCTTTCTTTCCTCTCAGAATTCTCTGGAGACAAACTCCAGGGAGTAAATTCATCTTTTGAAACGAAAAATACTTG
TATGGCTATTACCTTTAATC

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 79

Protein sequence:

>79_residues
MLVLARRSNQSIMIGDDIEIVIVDIKGDQVKIGVKAPKNVSVHRAEVYKEIQEENKKAAGTNIKPEDLGKLGDLFKKKT

Sequences:

>Translated_79_residues
MLVLARRSNQSIMIGDDIEIVIVDIKGDQVKIGVKAPKNVSVHRAEVYKEIQEENKKAAGTNIKPEDLGKLGDLFKKKT
>Mature_79_residues
MLVLARRSNQSIMIGDDIEIVIVDIKGDQVKIGVKAPKNVSVHRAEVYKEIQEENKKAAGTNIKPEDLGKLGDLFKKKT

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=59, Percent_Identity=49.1525423728814, Blast_Score=71, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_LEPBA (B0SGR0)

Other databases:

- EMBL:   CP000777
- RefSeq:   YP_001964145.1
- ProteinModelPortal:   B0SGR0
- SMR:   B0SGR0
- GeneID:   6387675
- GenomeReviews:   CP000777_GR
- KEGG:   lbf:LBF_3098
- HOGENOM:   HBG724655
- OMA:   RIGINAP
- ProtClustDB:   PRK01712
- BioCyc:   LBIF355278:LBF_3098-MONOMER
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 8773; Mature: 8773

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLARRSNQSIMIGDDIEIVIVDIKGDQVKIGVKAPKNVSVHRAEVYKEIQEENKKAAG
CEEEEECCCCEEEECCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
TNIKPEDLGKLGDLFKKKT
CCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLVLARRSNQSIMIGDDIEIVIVDIKGDQVKIGVKAPKNVSVHRAEVYKEIQEENKKAAG
CEEEEECCCCEEEECCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
TNIKPEDLGKLGDLFKKKT
CCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA