| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
Click here to switch to the map view.
The map label for this gene is rsbU [H]
Identifier: 183222470
GI number: 183222470
Start: 3237034
End: 3239010
Strand: Direct
Name: rsbU [H]
Synonym: LEPBI_I3124
Alternate gene names: 183222470
Gene position: 3237034-3239010 (Clockwise)
Preceding gene: 183222469
Following gene: 183222472
Centisome position: 89.93
GC content: 38.9
Gene sequence:
>1977_bases ATGAAACAGACGATCACCATTATACTGTTATGTCTCTTTCATTCTGTACTTTGGGCAGAGGAAAGTTCCTGCCCCAACGC AAAACACTATCCCATCTCCACAAATCTTGGTAAACCAACAGACCTCTCTCATCATTTAGTTTTCACATCCACTGAGATCC CCAAAAAAGAGATCCATGAAATCCAACGTTTATTCCAAACAAACCCCGTCGCATTTGCCAACGGAGAGATCCCCAATTTT GGGAATACAGCAAATCAATTCTGGTTCTGCTTTGTTTTACATAATGATGAAAATCATAATAAAAGAACCATAACCTTTAT CAAATACCCACTCCTCGACGAAGTCCAATTTTTCGCCTTACGAGAATCAGGTGAAATAAACAAAAACATCCAAGGTAGAA GGTATCCATTTCGGAATCGCGATAAAGACTATCGAGGATTTAGTTTTGCGACAGAACTTTTACCAAGCGAAACGGTCACT TATTTCGTAGGTGTCAAAACCGATAGTTCTGTCTCTGTCCCGCTCATGATAGCCGATGAGAAACATTTTGATTCATATGA ATCCATCGATACACTTTTACAAGGAATGTTTTTTGGTATTGTCTGTGTGATGAGTTTGTACAATTTATTTGTGTACTTCA TGGTAAAAGACAAAGCCTATTTATTTTATGTTAACTATCTGATTCTTGCCGCAATCCTATTCCAACTTTCCTTACAAGGA TTATTACCTGTATTGTTTTTGCCAGATGCACCTGATTTGGTTTATAACGCGCATAACTTTTTATACTTTATATTCCTTCT TTCTTGTTTTCCGATGAGTATCACCTTTATGAACTTAAAGGACAATGCTCCTATCCTTTACCGAGTGTTTATGGGTCTTT CCATCATTCCTGTGATCTGTTTGTTGCTCTTACCTTTTTTACCATACCGCCCCTTAAACCAATTTGGAGACCTACTTTCC TTCTGTTTGGCTTTTTATGCCTTGTTTGTTTCTTATTATGTTTCGTTTGTTAAAAAATTCCCGCCAGCTAGGTTTTATTT TTTTGGTTACTTTATGCTCATCATTGGTGGACTCACGACAGTGTTAAAGTATATGGGATTTTTTCCCGTCAATGTTTTCA CTGAAAATGCCTTCCAAGCAGCTACGGCCACTGAAGTGTTACTCATGGCATTTGGACTTGGTGATCGAATCTCTGTTGTC CAAAAGGAAAAAGAAAGGATCCAACTCAAAGCCGAGATCAACAAACAAAAGTTAATCGCCTATGGTAAAGAACTAAAACT TGCGCAAAAACTCCAAGAATCTACATTACCACAAATCCTTCCTAAATTTCCAGGCTTATCGATCAAAACTGGTTATTTCC CAGCCTCCCTCGTGGGGGGAGATTTTTACGACCTCACTGTCTATGGGAAACAACAGATTTGTGGCCTCATTGCAGATGTG ACAGGCCACGGAGTCCCTGCCGCAATTGAAGCGGCGATGTTAAAAATTGCCTATATGCAAACTCTGGCTTTTGCCAATAA ACCGGGAAAGGTTTTAGAAAGTATCAACGTTTCCCTTGCTGGAAACTACAAAAATCAATTTTTAACAGCAAGTGCTATCT TTATCGATTTGGAACAAAAGGTTTTGCGGGTGGCGAATGCAGGACACCCCGCCTTATACAAGTTCAATGAGAATTCAAAA TCGATTGAAGTGATCCGACCAAAGGGAAAACTCATAGGTTATTCGAAAGAAGGTATGTATCCAGAAGAAGTTCATTCCCT CATCAAAGGAGATAAATTATTTCTTTTTACAGATGGAATTTGGGATCTTTGGGAAAATGGGGATTCGGGAGAAGAAGTAC TTCTTGATTGGTTATTTCAAAGAAAAGGAGAGTCCGTCGAGTCTTTGTATGGTGGGATTGATGAACACATTCGCCTGCGA AACAAAGAAGGTCCCGCAGACGATGATATCACATTTATATTATTCGAAATTACCTAA
Upstream 100 bases:
>100_bases ATTTAGCGGGAATCTCCGTAGCTACCGCATAATTCCTTTTTTTTCTCTACAAACAGATTTACAAAGGAAGGTCATCGTCT TATACTAGTGACCTTCCAGT
Downstream 100 bases:
>100_bases ACAATTGGTAATCGAAAAATACGGACTAAACGTCCGCATAAATCGCTGCATTCAATAATCGTGAAATGTTGTCTAAGTTT CTGGAAATATCTCGGTAAAG
Product: serine phosphatase
Products: NA
Alternate protein names: Sigma factor sigB regulation protein rsbU [H]
Number of amino acids: Translated: 658; Mature: 658
Protein sequence:
>658_residues MKQTITIILLCLFHSVLWAEESSCPNAKHYPISTNLGKPTDLSHHLVFTSTEIPKKEIHEIQRLFQTNPVAFANGEIPNF GNTANQFWFCFVLHNDENHNKRTITFIKYPLLDEVQFFALRESGEINKNIQGRRYPFRNRDKDYRGFSFATELLPSETVT YFVGVKTDSSVSVPLMIADEKHFDSYESIDTLLQGMFFGIVCVMSLYNLFVYFMVKDKAYLFYVNYLILAAILFQLSLQG LLPVLFLPDAPDLVYNAHNFLYFIFLLSCFPMSITFMNLKDNAPILYRVFMGLSIIPVICLLLLPFLPYRPLNQFGDLLS FCLAFYALFVSYYVSFVKKFPPARFYFFGYFMLIIGGLTTVLKYMGFFPVNVFTENAFQAATATEVLLMAFGLGDRISVV QKEKERIQLKAEINKQKLIAYGKELKLAQKLQESTLPQILPKFPGLSIKTGYFPASLVGGDFYDLTVYGKQQICGLIADV TGHGVPAAIEAAMLKIAYMQTLAFANKPGKVLESINVSLAGNYKNQFLTASAIFIDLEQKVLRVANAGHPALYKFNENSK SIEVIRPKGKLIGYSKEGMYPEEVHSLIKGDKLFLFTDGIWDLWENGDSGEEVLLDWLFQRKGESVESLYGGIDEHIRLR NKEGPADDDITFILFEIT
Sequences:
>Translated_658_residues MKQTITIILLCLFHSVLWAEESSCPNAKHYPISTNLGKPTDLSHHLVFTSTEIPKKEIHEIQRLFQTNPVAFANGEIPNF GNTANQFWFCFVLHNDENHNKRTITFIKYPLLDEVQFFALRESGEINKNIQGRRYPFRNRDKDYRGFSFATELLPSETVT YFVGVKTDSSVSVPLMIADEKHFDSYESIDTLLQGMFFGIVCVMSLYNLFVYFMVKDKAYLFYVNYLILAAILFQLSLQG LLPVLFLPDAPDLVYNAHNFLYFIFLLSCFPMSITFMNLKDNAPILYRVFMGLSIIPVICLLLLPFLPYRPLNQFGDLLS FCLAFYALFVSYYVSFVKKFPPARFYFFGYFMLIIGGLTTVLKYMGFFPVNVFTENAFQAATATEVLLMAFGLGDRISVV QKEKERIQLKAEINKQKLIAYGKELKLAQKLQESTLPQILPKFPGLSIKTGYFPASLVGGDFYDLTVYGKQQICGLIADV TGHGVPAAIEAAMLKIAYMQTLAFANKPGKVLESINVSLAGNYKNQFLTASAIFIDLEQKVLRVANAGHPALYKFNENSK SIEVIRPKGKLIGYSKEGMYPEEVHSLIKGDKLFLFTDGIWDLWENGDSGEEVLLDWLFQRKGESVESLYGGIDEHIRLR NKEGPADDDITFILFEIT >Mature_658_residues MKQTITIILLCLFHSVLWAEESSCPNAKHYPISTNLGKPTDLSHHLVFTSTEIPKKEIHEIQRLFQTNPVAFANGEIPNF GNTANQFWFCFVLHNDENHNKRTITFIKYPLLDEVQFFALRESGEINKNIQGRRYPFRNRDKDYRGFSFATELLPSETVT YFVGVKTDSSVSVPLMIADEKHFDSYESIDTLLQGMFFGIVCVMSLYNLFVYFMVKDKAYLFYVNYLILAAILFQLSLQG LLPVLFLPDAPDLVYNAHNFLYFIFLLSCFPMSITFMNLKDNAPILYRVFMGLSIIPVICLLLLPFLPYRPLNQFGDLLS FCLAFYALFVSYYVSFVKKFPPARFYFFGYFMLIIGGLTTVLKYMGFFPVNVFTENAFQAATATEVLLMAFGLGDRISVV QKEKERIQLKAEINKQKLIAYGKELKLAQKLQESTLPQILPKFPGLSIKTGYFPASLVGGDFYDLTVYGKQQICGLIADV TGHGVPAAIEAAMLKIAYMQTLAFANKPGKVLESINVSLAGNYKNQFLTASAIFIDLEQKVLRVANAGHPALYKFNENSK SIEVIRPKGKLIGYSKEGMYPEEVHSLIKGDKLFLFTDGIWDLWENGDSGEEVLLDWLFQRKGESVESLYGGIDEHIRLR NKEGPADDDITFILFEIT
Specific function: Positive regulator of sigma-B activity. Dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017944 - InterPro: IPR001932 - InterPro: IPR014787 - InterPro: IPR010822 - ProDom: PD685490 [H]
Pfam domain/function: PF08673 RsbU_N; PF07228 SpoIIE [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 74840; Mature: 74840
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQTITIILLCLFHSVLWAEESSCPNAKHYPISTNLGKPTDLSHHLVFTSTEIPKKEIHE CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH IQRLFQTNPVAFANGEIPNFGNTANQFWFCFVLHNDENHNKRTITFIKYPLLDEVQFFAL HHHHHCCCCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCHHHHHHEEE RESGEINKNIQGRRYPFRNRDKDYRGFSFATELLPSETVTYFVGVKTDSSVSVPLMIADE ECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEECC KHFDSYESIDTLLQGMFFGIVCVMSLYNLFVYFMVKDKAYLFYVNYLILAAILFQLSLQG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHH LLPVLFLPDAPDLVYNAHNFLYFIFLLSCFPMSITFMNLKDNAPILYRVFMGLSIIPVIC CCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHH LLLLPFLPYRPLNQFGDLLSFCLAFYALFVSYYVSFVKKFPPARFYFFGYFMLIIGGLTT HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH VLKYMGFFPVNVFTENAFQAATATEVLLMAFGLGDRISVVQKEKERIQLKAEINKQKLIA HHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEHHHCCHHHHHH YGKELKLAQKLQESTLPQILPKFPGLSIKTGYFPASLVGGDFYDLTVYGKQQICGLIADV HHHHHHHHHHHHHCCHHHHHHCCCCCEEECCCCCHHHCCCCEEEEEEECHHHHHHHHHHH TGHGVPAAIEAAMLKIAYMQTLAFANKPGKVLESINVSLAGNYKNQFLTASAIFIDLEQK CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCEEEECCCCCCEEEEHHEEEEHHHH VLRVANAGHPALYKFNENSKSIEVIRPKGKLIGYSKEGMYPEEVHSLIKGDKLFLFTDGI HHHHHCCCCCEEEEECCCCCCEEEECCCCCEEECCCCCCCHHHHHHHHCCCEEEEEECCH WDLWENGDSGEEVLLDWLFQRKGESVESLYGGIDEHIRLRNKEGPADDDITFILFEIT HHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHEECCCCCCCCCCEEEEEEEEC >Mature Secondary Structure MKQTITIILLCLFHSVLWAEESSCPNAKHYPISTNLGKPTDLSHHLVFTSTEIPKKEIHE CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH IQRLFQTNPVAFANGEIPNFGNTANQFWFCFVLHNDENHNKRTITFIKYPLLDEVQFFAL HHHHHCCCCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCHHHHHHEEE RESGEINKNIQGRRYPFRNRDKDYRGFSFATELLPSETVTYFVGVKTDSSVSVPLMIADE ECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEECC KHFDSYESIDTLLQGMFFGIVCVMSLYNLFVYFMVKDKAYLFYVNYLILAAILFQLSLQG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHH LLPVLFLPDAPDLVYNAHNFLYFIFLLSCFPMSITFMNLKDNAPILYRVFMGLSIIPVIC CCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHH LLLLPFLPYRPLNQFGDLLSFCLAFYALFVSYYVSFVKKFPPARFYFFGYFMLIIGGLTT HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH VLKYMGFFPVNVFTENAFQAATATEVLLMAFGLGDRISVVQKEKERIQLKAEINKQKLIA HHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEHHHCCHHHHHH YGKELKLAQKLQESTLPQILPKFPGLSIKTGYFPASLVGGDFYDLTVYGKQQICGLIADV HHHHHHHHHHHHHCCHHHHHHCCCCCEEECCCCCHHHCCCCEEEEEEECHHHHHHHHHHH TGHGVPAAIEAAMLKIAYMQTLAFANKPGKVLESINVSLAGNYKNQFLTASAIFIDLEQK CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCEEEECCCCCCEEEEHHEEEEHHHH VLRVANAGHPALYKFNENSKSIEVIRPKGKLIGYSKEGMYPEEVHSLIKGDKLFLFTDGI HHHHHCCCCCEEEEECCCCCCEEEECCCCCEEECCCCCCCHHHHHHHHCCCEEEEEECCH WDLWENGDSGEEVLLDWLFQRKGESVESLYGGIDEHIRLRNKEGPADDDITFILFEIT HHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHEECCCCCCCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8002610; 8002609; 9384377; 8824586; 9786195; 12499568 [H]