| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
Click here to switch to the map view.
The map label for this gene is pdtaS [H]
Identifier: 183222453
GI number: 183222453
Start: 3223505
End: 3225247
Strand: Reverse
Name: pdtaS [H]
Synonym: LEPBI_I3107
Alternate gene names: 183222453
Gene position: 3225247-3223505 (Counterclockwise)
Preceding gene: 183222458
Following gene: 183222451
Centisome position: 89.6
GC content: 37.58
Gene sequence:
>1743_bases TTGGCAGTTTCTCAGGCAGAATTTCTCAAACTCAAAGGATACTCTGTGCAACATGTTTCCACTTCTTTAGATGCCATTGA TTGTATCTCTTCTGGTGAATCAGTGGATCTAATTCTTATGGATATCAATCTCTCCGATGAGTTAGATGGGATCCAATTAG CCAAAAAAATATTAGAAATCAAAGAAATCCCCATTCTTTTTGTGAGTGGTTACTCAGACCAAAAGATTTTGAACCGAGTT GCTGATTTAAAACATTATGGTTTCATTCCTAAAATCTCGAGTCCAGATATTGTGGAATGTATGATCAAGTCTGCTTTGAA ACTCCATGCCGTTGAGCAAAGTTTGACATTCCGAGAAAAAGAACTTCGGATTACATTTGAATCCATGGGGGACGGGCTGA TTGTTTTGACTCGAGAAGGCCAGATTAGAGAAATCAACCAAAAAGCATTAGATATGTTAGGTTACCATAAGATGGAGGTG ATGAACAAAGATTTATCCTCTTTTTTATTTTTAGTCCAAGCAGAATCTAGGATGAGGGTCTCGTATTCTTTTGATCATCA GTCGGAATCTTTTGTGGAACCGAAAAGAAGAAATAACCTCATCATCATCGCTAGCAATGGCCGCGAAACAAACGTTACGG AAACGGTCTCTCCTATATTAGATTCAAACAAAATTTTGAACGGCATTGTGATCGTATTTCGCGAGAATCCAGAATCTCAA ATCCTTGTTCCACCGAAAGATGGTGAAAGTTTATATGCGAAGGTCTTCCAACTAAGTCCCATTGCCATGGCAATCTCCAC CATCAAAGATGGAACTTACCTTGACATCAATCCTGCAATGGAAGCCATCTTCCGTTTTGAAAAATCAAAAGTCATCGGAA AAAAAACAGATGAATTCAAAGATTGGTGTGTTCCTGAACAAATTCAAAAGTTAAATGAAGTTTATCGGGAAAATGGAAGA CTTGCAGGCGAAAGGATGTCAGTGCAACATCCTGATGGAGTCCACCATGAAGTGCTAGTCTTTAGCCAAGCGATCGAGAT TTCTGGTGAACGTTTTATTCTTTGGTTTAATTTGGATGTTTCAAAAATATTGGACATCGAGGGTCGTTTGGCAAAATCCC TCGAAGAAAAAGACGTTTTATTAAAAGAACTACAACACCGAGTGAAAAATACTTTGGCGATTATCTCTGGATTACTCAAC CTCGAATCGTTCAAAGTTGAAAACGAATTGGCGAAACAATCATTTTTGAATGCACAATCTCGGATCATGTCCATGTCCAA GGTATATGAAAATTTATACCAATCTGCAGATTTGGAGTCAGTAGACCTCCGCAAGTACATCGAAGATTTGGTTTATAGCC TTCATGATATATTTGTTTTGAATCCAAGTAAAATTCGATTCGATGTCAAATTAGATGACATTCGATTGGATCTCAAACGT ACCTTACCCTTGGGTTTAATATTAAATGAACTATTGACCAATGCTCTGAAATATGCTTATCCAAATGAAAAGGGTGGAGA CATTCGAATCCAACTTACCAAATCAAATGAGAATGTGATGTTAACGGTTGGAGACGATGGAGTAGGACTTCCGGAATCAG TGAACATTGAAAAAGGAAATCATTTTGGTTATGAACTCATTCGCAGTTTGACATCACAACTCAAAGGTGTTTTCTCATCT GTTTCCAAAAAAGGAGAAGGATTGAATATTATGATCTCTTTTCCTGTTCACACGAAAGATTAA
Upstream 100 bases:
>100_bases TGCCCATTTTTAATCTTCGGTAGAAACAAGTATCCTTATGCCAACCACTGAAATCAAACATAGTTTAGGTCACATCCTGC TCGTCGAGGATGAAGCTATT
Downstream 100 bases:
>100_bases AAAAAGAATTCATTTCTCAACTTCTTTGCGTCCATGATTTCCTTAACCCATTGCTTTATGGCTCGATCTATGTTTGTGTT TCCTTCCTCGGATCGTTCCT
Product: putative regulatory protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 580; Mature: 579
Protein sequence:
>580_residues MAVSQAEFLKLKGYSVQHVSTSLDAIDCISSGESVDLILMDINLSDELDGIQLAKKILEIKEIPILFVSGYSDQKILNRV ADLKHYGFIPKISSPDIVECMIKSALKLHAVEQSLTFREKELRITFESMGDGLIVLTREGQIREINQKALDMLGYHKMEV MNKDLSSFLFLVQAESRMRVSYSFDHQSESFVEPKRRNNLIIIASNGRETNVTETVSPILDSNKILNGIVIVFRENPESQ ILVPPKDGESLYAKVFQLSPIAMAISTIKDGTYLDINPAMEAIFRFEKSKVIGKKTDEFKDWCVPEQIQKLNEVYRENGR LAGERMSVQHPDGVHHEVLVFSQAIEISGERFILWFNLDVSKILDIEGRLAKSLEEKDVLLKELQHRVKNTLAIISGLLN LESFKVENELAKQSFLNAQSRIMSMSKVYENLYQSADLESVDLRKYIEDLVYSLHDIFVLNPSKIRFDVKLDDIRLDLKR TLPLGLILNELLTNALKYAYPNEKGGDIRIQLTKSNENVMLTVGDDGVGLPESVNIEKGNHFGYELIRSLTSQLKGVFSS VSKKGEGLNIMISFPVHTKD
Sequences:
>Translated_580_residues MAVSQAEFLKLKGYSVQHVSTSLDAIDCISSGESVDLILMDINLSDELDGIQLAKKILEIKEIPILFVSGYSDQKILNRV ADLKHYGFIPKISSPDIVECMIKSALKLHAVEQSLTFREKELRITFESMGDGLIVLTREGQIREINQKALDMLGYHKMEV MNKDLSSFLFLVQAESRMRVSYSFDHQSESFVEPKRRNNLIIIASNGRETNVTETVSPILDSNKILNGIVIVFRENPESQ ILVPPKDGESLYAKVFQLSPIAMAISTIKDGTYLDINPAMEAIFRFEKSKVIGKKTDEFKDWCVPEQIQKLNEVYRENGR LAGERMSVQHPDGVHHEVLVFSQAIEISGERFILWFNLDVSKILDIEGRLAKSLEEKDVLLKELQHRVKNTLAIISGLLN LESFKVENELAKQSFLNAQSRIMSMSKVYENLYQSADLESVDLRKYIEDLVYSLHDIFVLNPSKIRFDVKLDDIRLDLKR TLPLGLILNELLTNALKYAYPNEKGGDIRIQLTKSNENVMLTVGDDGVGLPESVNIEKGNHFGYELIRSLTSQLKGVFSS VSKKGEGLNIMISFPVHTKD >Mature_579_residues AVSQAEFLKLKGYSVQHVSTSLDAIDCISSGESVDLILMDINLSDELDGIQLAKKILEIKEIPILFVSGYSDQKILNRVA DLKHYGFIPKISSPDIVECMIKSALKLHAVEQSLTFREKELRITFESMGDGLIVLTREGQIREINQKALDMLGYHKMEVM NKDLSSFLFLVQAESRMRVSYSFDHQSESFVEPKRRNNLIIIASNGRETNVTETVSPILDSNKILNGIVIVFRENPESQI LVPPKDGESLYAKVFQLSPIAMAISTIKDGTYLDINPAMEAIFRFEKSKVIGKKTDEFKDWCVPEQIQKLNEVYRENGRL AGERMSVQHPDGVHHEVLVFSQAIEISGERFILWFNLDVSKILDIEGRLAKSLEEKDVLLKELQHRVKNTLAIISGLLNL ESFKVENELAKQSFLNAQSRIMSMSKVYENLYQSADLESVDLRKYIEDLVYSLHDIFVLNPSKIRFDVKLDDIRLDLKRT LPLGLILNELLTNALKYAYPNEKGGDIRIQLTKSNENVMLTVGDDGVGLPESVNIEKGNHFGYELIRSLTSQLKGVFSSV SKKGEGLNIMISFPVHTKD
Specific function: Member of the two-component regulatory system pdtaR/pdtaS. Autophosphorylates, probably on a histidine residue, and transfers its phosphate group to pdtaR [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR022066 - InterPro: IPR011495 - InterPro: IPR005467 [H]
Pfam domain/function: PF12282 H_kinase_N; PF02518 HATPase_c; PF07568 HisKA_2 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 65621; Mature: 65489
Theoretical pI: Translated: 5.58; Mature: 5.58
Prosite motif: PS50112 PAS ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVSQAEFLKLKGYSVQHVSTSLDAIDCISSGESVDLILMDINLSDELDGIQLAKKILEI CCCCCCHHHEECCCEEEHHHCCHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHH KEIPILFVSGYSDQKILNRVADLKHYGFIPKISSPDIVECMIKSALKLHAVEQSLTFREK HCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEHH ELRITFESMGDGLIVLTREGQIREINQKALDMLGYHKMEVMNKDLSSFLFLVQAESRMRV HEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHEEEEECCCCEEE SYSFDHQSESFVEPKRRNNLIIIASNGRETNVTETVSPILDSNKILNGIVIVFRENPESQ EEEECCCCCCCCCHHHCCCEEEEECCCCCCCCHHHHHHHHCCCCEEEEEEEEEECCCCCE ILVPPKDGESLYAKVFQLSPIAMAISTIKDGTYLDINPAMEAIFRFEKSKVIGKKTDEFK EEECCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHH DWCVPEQIQKLNEVYRENGRLAGERMSVQHPDGVHHEVLVFSQAIEISGERFILWFNLDV HCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHEEHHHHEECCCEEEEEEECCH SKILDIEGRLAKSLEEKDVLLKELQHRVKNTLAIISGLLNLESFKVENELAKQSFLNAQS HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RIMSMSKVYENLYQSADLESVDLRKYIEDLVYSLHDIFVLNPSKIRFDVKLDDIRLDLKR HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEECCCEEEEEEEEEEEEEEHHH TLPLGLILNELLTNALKYAYPNEKGGDIRIQLTKSNENVMLTVGDDGVGLPESVNIEKGN CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCC HFGYELIRSLTSQLKGVFSSVSKKGEGLNIMISFPVHTKD CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC >Mature Secondary Structure AVSQAEFLKLKGYSVQHVSTSLDAIDCISSGESVDLILMDINLSDELDGIQLAKKILEI CCCCCHHHEECCCEEEHHHCCHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHH KEIPILFVSGYSDQKILNRVADLKHYGFIPKISSPDIVECMIKSALKLHAVEQSLTFREK HCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEHH ELRITFESMGDGLIVLTREGQIREINQKALDMLGYHKMEVMNKDLSSFLFLVQAESRMRV HEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHEEEEECCCCEEE SYSFDHQSESFVEPKRRNNLIIIASNGRETNVTETVSPILDSNKILNGIVIVFRENPESQ EEEECCCCCCCCCHHHCCCEEEEECCCCCCCCHHHHHHHHCCCCEEEEEEEEEECCCCCE ILVPPKDGESLYAKVFQLSPIAMAISTIKDGTYLDINPAMEAIFRFEKSKVIGKKTDEFK EEECCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHH DWCVPEQIQKLNEVYRENGRLAGERMSVQHPDGVHHEVLVFSQAIEISGERFILWFNLDV HCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHEEHHHHEECCCEEEEEEECCH SKILDIEGRLAKSLEEKDVLLKELQHRVKNTLAIISGLLNLESFKVENELAKQSFLNAQS HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RIMSMSKVYENLYQSADLESVDLRKYIEDLVYSLHDIFVLNPSKIRFDVKLDDIRLDLKR HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEECCCEEEEEEEEEEEEEEHHH TLPLGLILNELLTNALKYAYPNEKGGDIRIQLTKSNENVMLTVGDDGVGLPESVNIEKGN CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCC HFGYELIRSLTSQLKGVFSSVSKKGEGLNIMISFPVHTKD CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]