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The map label for this gene is yijC [C]

Identifier: 183222452

GI number: 183222452

Start: 3222818

End: 3223462

Strand: Direct

Name: yijC [C]

Synonym: LEPBI_I3106

Alternate gene names: 183222452

Gene position: 3222818-3223462 (Clockwise)

Preceding gene: 183222449

Following gene: 183222454

Centisome position: 89.53

GC content: 46.2

Gene sequence:

>645_bases
ATGAAACCAGGCATCCGAGACACAAAAAAACAAATCACGCACACAAACCTGCTAGAAAGCGCCCTCGAGCTGATGGGAGA
AGAGAAGGGATTGGGCGACCTGAGCCTCAGAGAAGTCACAGCAAAGGCTGGAATCGTTCCTGCGGCCTTCTACCGACATT
TTAAATCCATGGAAGAACTAGGCCTACACTTGGTGGAAGAATGTGGGAATCGCATCCAAATGATCGTAGGAGATGCGAGG
ACAAAAGGTGCCTACCGGTCTGCCCTACAACTCACCATAGGGTATTTTTTCGATTACGTCACAACGCACCGCTCTCGTTT
TCGATTCATTGCCAGAGAACGGACAGGGGGAAACCGTAAAATTCGGGAAAAGATCCGAGAGGCGATGGGAAGGATTGCAG
GGGAATTGGCCAAGGACATGCGGATGCCAAAGTCCTTAAGCAAAGATGATACATTATTTGCGTCCGAACTCATCGTGAGT
TTATGCTTTCAAATGGCATCTGATTATTTGGATTTGGATCCAGAAGAACATTTTGAGATGCGAAAGTTAAAAGTGAAAAC
GATCAAACAAGTTCGGTTGGTTTTCATAGGAACGATCCGAGGAAGGAAACACAAACATAGATCGAGCCATAAAGCAATGG
GTTAA

Upstream 100 bases:

>100_bases
TAATAGTGTTAACTTACATCGTTAACTATGTCAACCCAAAAGAAGGATTTTTTCCTTGCTTTCGCAAAAAAAGTGAACGA
TTGTTTACTGAATTCAATCC

Downstream 100 bases:

>100_bases
GGAAATCATGGACGCAAAGAAGTTGAGAAATGAATTCTTTTTTTAATCTTTCGTGTGAACAGGAAAAGAGATCATAATAT
TCAATCCTTCTCCTTTTTTG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MKPGIRDTKKQITHTNLLESALELMGEEKGLGDLSLREVTAKAGIVPAAFYRHFKSMEELGLHLVEECGNRIQMIVGDAR
TKGAYRSALQLTIGYFFDYVTTHRSRFRFIARERTGGNRKIREKIREAMGRIAGELAKDMRMPKSLSKDDTLFASELIVS
LCFQMASDYLDLDPEEHFEMRKLKVKTIKQVRLVFIGTIRGRKHKHRSSHKAMG

Sequences:

>Translated_214_residues
MKPGIRDTKKQITHTNLLESALELMGEEKGLGDLSLREVTAKAGIVPAAFYRHFKSMEELGLHLVEECGNRIQMIVGDAR
TKGAYRSALQLTIGYFFDYVTTHRSRFRFIARERTGGNRKIREKIREAMGRIAGELAKDMRMPKSLSKDDTLFASELIVS
LCFQMASDYLDLDPEEHFEMRKLKVKTIKQVRLVFIGTIRGRKHKHRSSHKAMG
>Mature_214_residues
MKPGIRDTKKQITHTNLLESALELMGEEKGLGDLSLREVTAKAGIVPAAFYRHFKSMEELGLHLVEECGNRIQMIVGDAR
TKGAYRSALQLTIGYFFDYVTTHRSRFRFIARERTGGNRKIREKIREAMGRIAGELAKDMRMPKSLSKDDTLFASELIVS
LCFQMASDYLDLDPEEHFEMRKLKVKTIKQVRLVFIGTIRGRKHKHRSSHKAMG

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693209, Length=196, Percent_Identity=29.0816326530612, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24501; Mature: 24501

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPGIRDTKKQITHTNLLESALELMGEEKGLGDLSLREVTAKAGIVPAAFYRHFKSMEEL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
GLHLVEECGNRIQMIVGDARTKGAYRSALQLTIGYFFDYVTTHRSRFRFIARERTGGNRK
HHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
IREKIREAMGRIAGELAKDMRMPKSLSKDDTLFASELIVSLCFQMASDYLDLDPEEHFEM
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
RKLKVKTIKQVRLVFIGTIRGRKHKHRSSHKAMG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
>Mature Secondary Structure
MKPGIRDTKKQITHTNLLESALELMGEEKGLGDLSLREVTAKAGIVPAAFYRHFKSMEEL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
GLHLVEECGNRIQMIVGDARTKGAYRSALQLTIGYFFDYVTTHRSRFRFIARERTGGNRK
HHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
IREKIREAMGRIAGELAKDMRMPKSLSKDDTLFASELIVSLCFQMASDYLDLDPEEHFEM
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
RKLKVKTIKQVRLVFIGTIRGRKHKHRSSHKAMG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]