| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is xylA [H]
Identifier: 183222161
GI number: 183222161
Start: 2899749
End: 2902001
Strand: Direct
Name: xylA [H]
Synonym: LEPBI_I2804
Alternate gene names: 183222161
Gene position: 2899749-2902001 (Clockwise)
Preceding gene: 183222160
Following gene: 183222163
Centisome position: 80.56
GC content: 38.62
Gene sequence:
>2253_bases ATGGAGTTGGATATGTTCTCAACAGATCAAATCAGCACAAAAAAGACAATGCAACCAATTGCTAGTAAAACCGCAATCCA AGCGAAAATCAACGGAGCCACGATTCAGCTTCTTTCCAATGAAAACATCTTGAGTGCGGCATTACGTCAGGGAATTGATT TCCCCCATAGTTGTCGTGTCGGTGGCTGTGCTACCTGCAAATGCCAGTTAATCCATGGGAAGGTCAAAGAATTAACGGAA ACAGGTTATTTATTATCAGATGAAGAGTTGAACAATGGTTATATCCTAGCTTGCCAATCCATACCCCAAACAGATGTAGA GATTCGGGTTCCAAACAAGGAATTCATTTTAGGGCAAGTCATCAGACAAAAATTTTTAACAAAAGAAATTTGTGAAATCA CGATCCAACTAAAAATACCCATCAACTTCAAGGCTGGCCAATATGTATCTCTTTCCATCGAAGGAATGGATGCAGAACGA AATTATTCCATCGCAAATGCACCCAATGAGAAAGGGATTGTGTCTTTCATCATACGAAACGTTCCCGGTGGAAAATTATC AAATTATATATTCAATGAAAATTTAGTTGGGAAAAAAACAAAAGTCAAAGGTGCTTTTGGGAATTTTTATCTAAGAGATA GTAAAAACCCAATTCTTATGATTGCTGGTGGAAGTGGACTATCACCAATCCTTGCAATCTTAGAACAAGGGATATTGAAT GGCACCAAACGGCCGCTCACCTTACTTTTTGGTGCTCGAAAAAAAGAAGACCTATACAAACTGAATGAACTTCAAAAAAT AAAAAAATTATGGAAAGGGAAATTCAATTTTATTCCAGTTCTCTCTGAAGAACCAAAAGAAAGTTCTTGGAAAGGAGAAC GAGGTCTCGTCACATCAAAAATTAAGGAATACATCACTAATAAAACAGAAGCGTATCTATGTGGACCACCTCCGATGGTA GATTCTGCCACCAAAGAATTAACCTTAATGGGAATTCCAAAACATTCCATTTATGCCGATCGATTTACAACAATCGATCA CAGTTTGAGTTTAAACATAGATGACATACAGAATAGAAGCAAAGCAGGATTTTTTGATTATCTAAAATTTTTTTTATTCC ATGCTGTGGCGATCATGTCTGTAGTGAGTTTACTTATGGGAGGGTTCTATACTACGATTGGATTTTTTTCCCTCTTATTC TTTTATATTATTGGAGATGCGATTTCTGGTGATGACAAAAGTACTCCTAATTTTTCAAGACCAGATGTATTGACCTTACA ACTTTGGATGGCATTACCTATTTTATGTGTCATTTTTTTTAGCTCCGTATGGACAGTTAGTCCGACCGATACCCTCGGAT TTGGATCCTGGCTTTCTCAAATATTCGATTATGATTTTAATTTTGCGAAAACAAATACGACAATCATAGAGCATGTCTAT GCAATCATCTTATCCGGTTTAATGATTGGCCTTGTTGGAACCATTACAGCTCATGAATTGACTCATCGAACTTGGGATCC GATTTCCATGTTCATTGGAAGATGGTTACTTGCATTCAGTTTTGATACCATTTTTTCGATTGAACATGTGTATGGACACC ATCGGTATGTCTCCACAACGGAAGATCCTGCAACAGCACCCCGCGGCAGAAATGTGTATTACCATATCCTTGCTTCTACC ATCAAAGGAAATATTAGCGCTTGGGACATTGAAGTGAAACGATTAAAAAGAATGAACTACTCCATCCTTTCCTATCACAA TGCATATCTCCGAGGCCATTTAATGAGTGTCAGTTTGGTGACTTTGGCCTATCTAATTAGTGGTATCACGGGAATGTTCT TTTTTATTGCATCTGGTTTATTTGGGAAAGCACTGCTTGAGATCGTAAACTATATGGAACATTATGGAATGGTTCGTTTA CCAGAAGAGCCTGTGCAACCGAGGCATTCCTGGAATACCAATAAAAGGATTAGTTCATGGACTATGTTCAATTTGACACG CCACTCCCACCATCATGCACAAGGAGAAGTTGCTTACCAAGATCTTAGACCCTTTCCGAATGCGCCTATGATGATAAGTG GGTATCTGACAACCATCGTAATTGCACTCATCCCGCCACTATGGCACCGATTGATGGTTCCCAAGGTGCTTGAATGGGAT CAAAAATTTGCGAGTCCAGAAGAACTCGAACTTGCCAAAATCGCAAACCAAAGAAGTGGTATTCCGAAATTCATTTCATC TAACAAGGGCTAG
Upstream 100 bases:
>100_bases CTTAAGTTCGCATTACTTTATTTATAACAATCGTTCGATAAAAAGCCCCAATTGGGTTGAATGATGCTTTCTTGGATTCG GGCCAATTGCGTGAAAAGGA
Downstream 100 bases:
>100_bases ATTTCATTAATGTCGCCTGAGAATAAATCTCCTAAGTATTTTAATCCTTCCAATAGATGGATCCATGATGTTTCAGGTTC TCCTTTTAATTTCAAAAACA
Product: putative oxidoreductase
Products: NA
Alternate protein names: Ferredoxin; Ferredoxin--NAD(+) reductase [H]
Number of amino acids: Translated: 750; Mature: 750
Protein sequence:
>750_residues MELDMFSTDQISTKKTMQPIASKTAIQAKINGATIQLLSNENILSAALRQGIDFPHSCRVGGCATCKCQLIHGKVKELTE TGYLLSDEELNNGYILACQSIPQTDVEIRVPNKEFILGQVIRQKFLTKEICEITIQLKIPINFKAGQYVSLSIEGMDAER NYSIANAPNEKGIVSFIIRNVPGGKLSNYIFNENLVGKKTKVKGAFGNFYLRDSKNPILMIAGGSGLSPILAILEQGILN GTKRPLTLLFGARKKEDLYKLNELQKIKKLWKGKFNFIPVLSEEPKESSWKGERGLVTSKIKEYITNKTEAYLCGPPPMV DSATKELTLMGIPKHSIYADRFTTIDHSLSLNIDDIQNRSKAGFFDYLKFFLFHAVAIMSVVSLLMGGFYTTIGFFSLLF FYIIGDAISGDDKSTPNFSRPDVLTLQLWMALPILCVIFFSSVWTVSPTDTLGFGSWLSQIFDYDFNFAKTNTTIIEHVY AIILSGLMIGLVGTITAHELTHRTWDPISMFIGRWLLAFSFDTIFSIEHVYGHHRYVSTTEDPATAPRGRNVYYHILAST IKGNISAWDIEVKRLKRMNYSILSYHNAYLRGHLMSVSLVTLAYLISGITGMFFFIASGLFGKALLEIVNYMEHYGMVRL PEEPVQPRHSWNTNKRISSWTMFNLTRHSHHHAQGEVAYQDLRPFPNAPMMISGYLTTIVIALIPPLWHRLMVPKVLEWD QKFASPEELELAKIANQRSGIPKFISSNKG
Sequences:
>Translated_750_residues MELDMFSTDQISTKKTMQPIASKTAIQAKINGATIQLLSNENILSAALRQGIDFPHSCRVGGCATCKCQLIHGKVKELTE TGYLLSDEELNNGYILACQSIPQTDVEIRVPNKEFILGQVIRQKFLTKEICEITIQLKIPINFKAGQYVSLSIEGMDAER NYSIANAPNEKGIVSFIIRNVPGGKLSNYIFNENLVGKKTKVKGAFGNFYLRDSKNPILMIAGGSGLSPILAILEQGILN GTKRPLTLLFGARKKEDLYKLNELQKIKKLWKGKFNFIPVLSEEPKESSWKGERGLVTSKIKEYITNKTEAYLCGPPPMV DSATKELTLMGIPKHSIYADRFTTIDHSLSLNIDDIQNRSKAGFFDYLKFFLFHAVAIMSVVSLLMGGFYTTIGFFSLLF FYIIGDAISGDDKSTPNFSRPDVLTLQLWMALPILCVIFFSSVWTVSPTDTLGFGSWLSQIFDYDFNFAKTNTTIIEHVY AIILSGLMIGLVGTITAHELTHRTWDPISMFIGRWLLAFSFDTIFSIEHVYGHHRYVSTTEDPATAPRGRNVYYHILAST IKGNISAWDIEVKRLKRMNYSILSYHNAYLRGHLMSVSLVTLAYLISGITGMFFFIASGLFGKALLEIVNYMEHYGMVRL PEEPVQPRHSWNTNKRISSWTMFNLTRHSHHHAQGEVAYQDLRPFPNAPMMISGYLTTIVIALIPPLWHRLMVPKVLEWD QKFASPEELELAKIANQRSGIPKFISSNKG >Mature_750_residues MELDMFSTDQISTKKTMQPIASKTAIQAKINGATIQLLSNENILSAALRQGIDFPHSCRVGGCATCKCQLIHGKVKELTE TGYLLSDEELNNGYILACQSIPQTDVEIRVPNKEFILGQVIRQKFLTKEICEITIQLKIPINFKAGQYVSLSIEGMDAER NYSIANAPNEKGIVSFIIRNVPGGKLSNYIFNENLVGKKTKVKGAFGNFYLRDSKNPILMIAGGSGLSPILAILEQGILN GTKRPLTLLFGARKKEDLYKLNELQKIKKLWKGKFNFIPVLSEEPKESSWKGERGLVTSKIKEYITNKTEAYLCGPPPMV DSATKELTLMGIPKHSIYADRFTTIDHSLSLNIDDIQNRSKAGFFDYLKFFLFHAVAIMSVVSLLMGGFYTTIGFFSLLF FYIIGDAISGDDKSTPNFSRPDVLTLQLWMALPILCVIFFSSVWTVSPTDTLGFGSWLSQIFDYDFNFAKTNTTIIEHVY AIILSGLMIGLVGTITAHELTHRTWDPISMFIGRWLLAFSFDTIFSIEHVYGHHRYVSTTEDPATAPRGRNVYYHILAST IKGNISAWDIEVKRLKRMNYSILSYHNAYLRGHLMSVSLVTLAYLISGITGMFFFIASGLFGKALLEIVNYMEHYGMVRL PEEPVQPRHSWNTNKRISSWTMFNLTRHSHHHAQGEVAYQDLRPFPNAPMMISGYLTTIVIALIPPLWHRLMVPKVLEWD QKFASPEELELAKIANQRSGIPKFISSNKG
Specific function: Oxidizes toluene and xylenes to (methyl)benzyl alcohols. The enzyme has a broad specificity and also oxidizes (methyl)benzyl alcohols to (methyl)benzaldehydes and indole to indoxyl [H]
COG id: COG0543
COG function: function code HC; 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding FR-type domain [H]
Homologues:
Organism=Escherichia coli, GI1787658, Length=236, Percent_Identity=27.5423728813559, Blast_Score=86, Evalue=7e-18, Organism=Escherichia coli, GI2367314, Length=184, Percent_Identity=27.7173913043478, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1790359, Length=219, Percent_Identity=28.310502283105, Blast_Score=73, Evalue=6e-14, Organism=Saccharomyces cerevisiae, GI6322146, Length=196, Percent_Identity=28.0612244897959, Blast_Score=77, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6323552, Length=190, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006058 - InterPro: IPR012675 - InterPro: IPR017927 - InterPro: IPR001041 - InterPro: IPR001709 - InterPro: IPR008333 - InterPro: IPR001433 - InterPro: IPR001221 - InterPro: IPR017938 [H]
Pfam domain/function: PF00970 FAD_binding_6; PF00111 Fer2; PF00175 NAD_binding_1 [H]
EC number: =1.18.1.3 [H]
Molecular weight: Translated: 84466; Mature: 84466
Theoretical pI: Translated: 9.23; Mature: 9.23
Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELDMFSTDQISTKKTMQPIASKTAIQAKINGATIQLLSNENILSAALRQGIDFPHSCRV CCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCCC GGCATCKCQLIHGKVKELTETGYLLSDEELNNGYILACQSIPQTDVEIRVPNKEFILGQV CCCCEEEEEEEHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCCCCEEECCCHHHHHHHH IRQKFLTKEICEITIQLKIPINFKAGQYVSLSIEGMDAERNYSIANAPNEKGIVSFIIRN HHHHHHHHHHHEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHC VPGGKLSNYIFNENLVGKKTKVKGAFGNFYLRDSKNPILMIAGGSGLSPILAILEQGILN CCCCCHHHHEECCCCCCCCEEECCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHC GTKRPLTLLFGARKKEDLYKLNELQKIKKLWKGKFNFIPVLSEEPKESSWKGERGLVTSK CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHHHH IKEYITNKTEAYLCGPPPMVDSATKELTLMGIPKHSIYADRFTTIDHSLSLNIDDIQNRS HHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHEEECCEEEECHHHHCCCC KAGFFDYLKFFLFHAVAIMSVVSLLMGGFYTTIGFFSLLFFYIIGDAISGDDKSTPNFSR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC PDVLTLQLWMALPILCVIFFSSVWTVSPTDTLGFGSWLSQIFDYDFNFAKTNTTIIEHVY CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH AIILSGLMIGLVGTITAHELTHRTWDPISMFIGRWLLAFSFDTIFSIEHVYGHHRYVSTT HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC EDPATAPRGRNVYYHILASTIKGNISAWDIEVKRLKRMNYSILSYHNAYLRGHLMSVSLV CCCCCCCCCCCEEEEEEEHHHCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH TLAYLISGITGMFFFIASGLFGKALLEIVNYMEHYGMVRLPEEPVQPRHSWNTNKRISSW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCE TMFNLTRHSHHHAQGEVAYQDLRPFPNAPMMISGYLTTIVIALIPPLWHRLMVPKVLEWD EEEEEHHCCCCCCCCCEEHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH QKFASPEELELAKIANQRSGIPKFISSNKG HHCCCCCHHHHHHHHHHCCCCCHHHCCCCC >Mature Secondary Structure MELDMFSTDQISTKKTMQPIASKTAIQAKINGATIQLLSNENILSAALRQGIDFPHSCRV CCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCCC GGCATCKCQLIHGKVKELTETGYLLSDEELNNGYILACQSIPQTDVEIRVPNKEFILGQV CCCCEEEEEEEHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCCCCEEECCCHHHHHHHH IRQKFLTKEICEITIQLKIPINFKAGQYVSLSIEGMDAERNYSIANAPNEKGIVSFIIRN HHHHHHHHHHHEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHC VPGGKLSNYIFNENLVGKKTKVKGAFGNFYLRDSKNPILMIAGGSGLSPILAILEQGILN CCCCCHHHHEECCCCCCCCEEECCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHC GTKRPLTLLFGARKKEDLYKLNELQKIKKLWKGKFNFIPVLSEEPKESSWKGERGLVTSK CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHHHH IKEYITNKTEAYLCGPPPMVDSATKELTLMGIPKHSIYADRFTTIDHSLSLNIDDIQNRS HHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHEEECCEEEECHHHHCCCC KAGFFDYLKFFLFHAVAIMSVVSLLMGGFYTTIGFFSLLFFYIIGDAISGDDKSTPNFSR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC PDVLTLQLWMALPILCVIFFSSVWTVSPTDTLGFGSWLSQIFDYDFNFAKTNTTIIEHVY CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH AIILSGLMIGLVGTITAHELTHRTWDPISMFIGRWLLAFSFDTIFSIEHVYGHHRYVSTT HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC EDPATAPRGRNVYYHILASTIKGNISAWDIEVKRLKRMNYSILSYHNAYLRGHLMSVSLV CCCCCCCCCCCEEEEEEEHHHCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH TLAYLISGITGMFFFIASGLFGKALLEIVNYMEHYGMVRLPEEPVQPRHSWNTNKRISSW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCE TMFNLTRHSHHHAQGEVAYQDLRPFPNAPMMISGYLTTIVIALIPPLWHRLMVPKVLEWD EEEEEHHCCCCCCCCCEEHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH QKFASPEELELAKIANQRSGIPKFISSNKG HHCCCCCHHHHHHHHHHCCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1999388 [H]