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The map label for this gene is ybeY [C]

Identifier: 183221474

GI number: 183221474

Start: 2186046

End: 2186510

Strand: Reverse

Name: ybeY [C]

Synonym: LEPBI_I2092

Alternate gene names: 183221474

Gene position: 2186510-2186046 (Counterclockwise)

Preceding gene: 183221475

Following gene: 183221473

Centisome position: 60.74

GC content: 35.48

Gene sequence:

>465_bases
ATGAACCCGTCCCTTTCGGTTTTCACTCATTGGAATGACGAATCAAACCAATCAGAAATTTTTTCTGATCCTGTGATATC
CAATTGTGAAAAAATATTACGATTCTTAGCACCTGAGTTTTTACATTCATTGGAACTTTCAATTTATCTAGTCAATGATT
CGCTAATGGCTGAAATTAATGAAGAGAGAAGAGGAAAACCTGCTACCACGGATGTTTTATCCTTTCCATTGTATTCGGAA
CATCCACCGATCCCTGTTCAAATTTTAGGTGAAGTAGTGATTTCAATGGAGACTTGTAAAAAACAAGCAATGGAAATTGG
ACATGGCCTCGTTGATGAATTTTATCGATTGTTAGTACATGGGATTTTACATAACTTTGGATATGACCATGAGACAAATG
AGGAAGATGCTTTGCTCATGAGAAAAATGGAAGATGAATGTTTGGATTTGGTTTTTGCAACATAA

Upstream 100 bases:

>100_bases
TCAAAGAAGTATTACTTTCCAGTCTTCACCAAAGACCAAAATACCCAAAACCAGAAGATACAAAGGCCTTAGAGTCAGCG
AATACCAAAAAGACGAAGCG

Downstream 100 bases:

>100_bases
ATGGCGATTCGAAAAGAAATTGGAATCATCATCCAAAGTAAAGATATAGGGGAAAGCGACAGGCTGATTAGTTTGGCTGG
AGAGACCCAAGTTCGGATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MNPSLSVFTHWNDESNQSEIFSDPVISNCEKILRFLAPEFLHSLELSIYLVNDSLMAEINEERRGKPATTDVLSFPLYSE
HPPIPVQILGEVVISMETCKKQAMEIGHGLVDEFYRLLVHGILHNFGYDHETNEEDALLMRKMEDECLDLVFAT

Sequences:

>Translated_154_residues
MNPSLSVFTHWNDESNQSEIFSDPVISNCEKILRFLAPEFLHSLELSIYLVNDSLMAEINEERRGKPATTDVLSFPLYSE
HPPIPVQILGEVVISMETCKKQAMEIGHGLVDEFYRLLVHGILHNFGYDHETNEEDALLMRKMEDECLDLVFAT
>Mature_154_residues
MNPSLSVFTHWNDESNQSEIFSDPVISNCEKILRFLAPEFLHSLELSIYLVNDSLMAEINEERRGKPATTDVLSFPLYSE
HPPIPVQILGEVVISMETCKKQAMEIGHGLVDEFYRLLVHGILHNFGYDHETNEEDALLMRKMEDECLDLVFAT

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=108, Percent_Identity=36.1111111111111, Blast_Score=63, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_LEPBA (B0SB32)

Other databases:

- EMBL:   CP000777
- RefSeq:   YP_001963116.1
- ProteinModelPortal:   B0SB32
- SMR:   B0SB32
- GeneID:   6388379
- GenomeReviews:   CP000777_GR
- KEGG:   lbf:LBF_2038
- HOGENOM:   HBG734136
- OMA:   GCDYATD
- ProtClustDB:   CLSK2336752
- BioCyc:   LBIF355278:LBF_2038-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17640; Mature: 17640

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPSLSVFTHWNDESNQSEIFSDPVISNCEKILRFLAPEFLHSLELSIYLVNDSLMAEIN
CCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHH
EERRGKPATTDVLSFPLYSEHPPIPVQILGEVVISMETCKKQAMEIGHGLVDEFYRLLVH
HHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
GILHNFGYDHETNEEDALLMRKMEDECLDLVFAT
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNPSLSVFTHWNDESNQSEIFSDPVISNCEKILRFLAPEFLHSLELSIYLVNDSLMAEIN
CCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHH
EERRGKPATTDVLSFPLYSEHPPIPVQILGEVVISMETCKKQAMEIGHGLVDEFYRLLVH
HHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
GILHNFGYDHETNEEDALLMRKMEDECLDLVFAT
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA