Click here to switch to the map view.

The map label for this gene is yoaA [H]

Identifier: 183221105

GI number: 183221105

Start: 1790301

End: 1792286

Strand: Direct

Name: yoaA [H]

Synonym: LEPBI_I1719

Alternate gene names: 183221105

Gene position: 1790301-1792286 (Clockwise)

Preceding gene: 183221104

Following gene: 183221106

Centisome position: 49.74

GC content: 38.27

Gene sequence:

>1986_bases
TTGGACGTTTCATCTGTTTTTACCAAACAACTTCCAAAACTTTGGAAAGACTATGAAGTCAGAAAAGAACAAATGGAGAT
GTCTCAGGCAATCGAGTCTGCATTTCAAACTGGTTCCAATTGGGTGATTGAAGCAGGTACTGGGGTCGGTAAGTCGCTTG
CCTACCTTATTCCAAGTGCCCTTTTTTCGCTCGAAAATGAATGTACCGTTGTTGTTTCCACGGAAACAAAATCATTACAA
GACCAACTTCTTTATAAGGATATCCCTCTTGTTTCTGAGGCTTTAGGGGTTCCCATCAATGCAATGGTTGCACTTGGTGC
AAACAATTACCTTTGCAAACGAAAATACAACCGAGTCATGGAACGAGGTGATTTTGGTCCAGAAATGGAATCGTCACTCC
CCTATTTTGTCAATTGGGAGAAACAAACGGAAAGTGGGATTCGGGCTGAATACGATGGCTTTTTGTCTAATTCGTTTTGG
TCTTCTGTCGCTCGTGAGTCTGACAACTGTTTGGGGAGAAATTGTCCTAATTTTAGTTCCTCGTATTATTTTTTAGAAAA
GGATAAATGGAAAAAAGCAAATATCTTAATTGTAAACCATCACTTACTTGCAAGTCATTTGGCAGGTGATTTTAAGCTTT
TACCTCCTTTTTCGCAACTCGTCATTGATGAAGCACATGTTTTTCCAGAAATCGTTGGCAAAGCTTTTGGATCAGAAATT
CGTTATGAATTTATTTTGAATTTGCTCCATTACCTTTATTTTCCAGAAAAACGTACTGGATTGGTTTTGAAATTAAAGTC
GAATGAAAAAATCATCAAACAAATAGAAGCAAGCATTAGTTATGCGAATGATTTATTTCGGATGCTTTTGTCTGCTATTC
CTTTACAATTCAATCAATTTTCTAGCCGGCATACGGAACGAATCAAACTGGATAATGGTGCTTTAGAAGATACATTGGCT
GACCTTTCTTCAACCTTAGAAGGACTATTATCGAAGTATAAAAAAGATAGTGACGATATGGAAGAAAAAGAGTTGGCTTT
GGGTCTGGAGATGGTGGCTGGAAATTTAAAGAAGGTTTCTTCTTTCCTCACTGACTTTCGATTAAAAACAAATCCAAATT
TAGTGTTTTGGATTGAACCTCCACCGCAGATGGCAAAAGATCCGTTCTACTATTTGTTTTCCCAACCAAAAAATACAGAT
GAAATACTAGCAAATACTCTTTTTCCCAATATGGATTCCGTTGTCTTAACCTCTGCTACACTGTCACCTACAGCGGGAAA
CTTTCAATATTTTTTAAAAGAGGTGGGCACAAGTGAAGTCAAAACAAAAACCCTCAATTCTCCTTTTCAATACCAGACTC
ATTCGCTTCTTTTTGTACCCAAACAAATTGCCGATCCTGTTTCTGATCCGAAACGAAACAAAATTGACCTTTCCTATTGG
ATCACTCGGCTATTGAAACTTTCAGAGGGAGACGCCTTTGTATTGTTTACCTCGAATAAATTACTTTCAGAATTATATGA
AGAGATTCGAAATTTAGTCCCCTATCCTATTTTTGCCCAAACGGAAATGGGGCCTATTGCCGCCAAACGTGAGTTCCTCG
CAAACAAAAATAGTGTACTTTTTGGTGTATCAAGTTTCTGGCAGGGTGTGGATATCAAGGGTGATAAACTTAGAAATGTG
ATTGTGACAAAACTTCCTTTCCAAGTTCCAACAGAACCTGTTCTCCAAGCAAAAATGGAAGATATGGAGAAAAAGGGAAA
AAGTCCCTTTTGGGAAATGCAAGTTCCAAAAACATGTTTGTTACTCAGACAAGGATTTGGAAGACTCATCCGCTCCCAAT
CCGACACGGGGATGGTGAGTATCCTCGATCCACGGATTCATACAAAATCCTATGGAAAAAACGTCTTGCAAAGTTTACCG
AAAGGAGTTCCGCTCATTACGGAATTTAATGATTTAGAAAGAAAATTCCATTTATTGCCGAAGTGA

Upstream 100 bases:

>100_bases
CAATTGGCAAGGAATCCTGATTATGACTGTTTCTTTGGTTTCTGTGATTAGTTTAACTGTTGTCTGTGTGATCCTTCTTT
TTAGAAACAGGCATTAGAAT

Downstream 100 bases:

>100_bases
TTAGTATGAAGCGAACATTTATTTTGATCTTTTTCTGTTTTGGAATCACAACATTTGCGAAACCCATTGAAGATAAAGAT
ATCTATTCGTCGGTTGTGAA

Product: putative ATP-dependent helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 661; Mature: 661

Protein sequence:

>661_residues
MDVSSVFTKQLPKLWKDYEVRKEQMEMSQAIESAFQTGSNWVIEAGTGVGKSLAYLIPSALFSLENECTVVVSTETKSLQ
DQLLYKDIPLVSEALGVPINAMVALGANNYLCKRKYNRVMERGDFGPEMESSLPYFVNWEKQTESGIRAEYDGFLSNSFW
SSVARESDNCLGRNCPNFSSSYYFLEKDKWKKANILIVNHHLLASHLAGDFKLLPPFSQLVIDEAHVFPEIVGKAFGSEI
RYEFILNLLHYLYFPEKRTGLVLKLKSNEKIIKQIEASISYANDLFRMLLSAIPLQFNQFSSRHTERIKLDNGALEDTLA
DLSSTLEGLLSKYKKDSDDMEEKELALGLEMVAGNLKKVSSFLTDFRLKTNPNLVFWIEPPPQMAKDPFYYLFSQPKNTD
EILANTLFPNMDSVVLTSATLSPTAGNFQYFLKEVGTSEVKTKTLNSPFQYQTHSLLFVPKQIADPVSDPKRNKIDLSYW
ITRLLKLSEGDAFVLFTSNKLLSELYEEIRNLVPYPIFAQTEMGPIAAKREFLANKNSVLFGVSSFWQGVDIKGDKLRNV
IVTKLPFQVPTEPVLQAKMEDMEKKGKSPFWEMQVPKTCLLLRQGFGRLIRSQSDTGMVSILDPRIHTKSYGKNVLQSLP
KGVPLITEFNDLERKFHLLPK

Sequences:

>Translated_661_residues
MDVSSVFTKQLPKLWKDYEVRKEQMEMSQAIESAFQTGSNWVIEAGTGVGKSLAYLIPSALFSLENECTVVVSTETKSLQ
DQLLYKDIPLVSEALGVPINAMVALGANNYLCKRKYNRVMERGDFGPEMESSLPYFVNWEKQTESGIRAEYDGFLSNSFW
SSVARESDNCLGRNCPNFSSSYYFLEKDKWKKANILIVNHHLLASHLAGDFKLLPPFSQLVIDEAHVFPEIVGKAFGSEI
RYEFILNLLHYLYFPEKRTGLVLKLKSNEKIIKQIEASISYANDLFRMLLSAIPLQFNQFSSRHTERIKLDNGALEDTLA
DLSSTLEGLLSKYKKDSDDMEEKELALGLEMVAGNLKKVSSFLTDFRLKTNPNLVFWIEPPPQMAKDPFYYLFSQPKNTD
EILANTLFPNMDSVVLTSATLSPTAGNFQYFLKEVGTSEVKTKTLNSPFQYQTHSLLFVPKQIADPVSDPKRNKIDLSYW
ITRLLKLSEGDAFVLFTSNKLLSELYEEIRNLVPYPIFAQTEMGPIAAKREFLANKNSVLFGVSSFWQGVDIKGDKLRNV
IVTKLPFQVPTEPVLQAKMEDMEKKGKSPFWEMQVPKTCLLLRQGFGRLIRSQSDTGMVSILDPRIHTKSYGKNVLQSLP
KGVPLITEFNDLERKFHLLPK
>Mature_661_residues
MDVSSVFTKQLPKLWKDYEVRKEQMEMSQAIESAFQTGSNWVIEAGTGVGKSLAYLIPSALFSLENECTVVVSTETKSLQ
DQLLYKDIPLVSEALGVPINAMVALGANNYLCKRKYNRVMERGDFGPEMESSLPYFVNWEKQTESGIRAEYDGFLSNSFW
SSVARESDNCLGRNCPNFSSSYYFLEKDKWKKANILIVNHHLLASHLAGDFKLLPPFSQLVIDEAHVFPEIVGKAFGSEI
RYEFILNLLHYLYFPEKRTGLVLKLKSNEKIIKQIEASISYANDLFRMLLSAIPLQFNQFSSRHTERIKLDNGALEDTLA
DLSSTLEGLLSKYKKDSDDMEEKELALGLEMVAGNLKKVSSFLTDFRLKTNPNLVFWIEPPPQMAKDPFYYLFSQPKNTD
EILANTLFPNMDSVVLTSATLSPTAGNFQYFLKEVGTSEVKTKTLNSPFQYQTHSLLFVPKQIADPVSDPKRNKIDLSYW
ITRLLKLSEGDAFVLFTSNKLLSELYEEIRNLVPYPIFAQTEMGPIAAKREFLANKNSVLFGVSSFWQGVDIKGDKLRNV
IVTKLPFQVPTEPVLQAKMEDMEKKGKSPFWEMQVPKTCLLLRQGFGRLIRSQSDTGMVSILDPRIHTKSYGKNVLQSLP
KGVPLITEFNDLERKFHLLPK

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=641, Percent_Identity=29.9531981279251, Blast_Score=281, Evalue=8e-77,
Organism=Escherichia coli, GI1787018, Length=670, Percent_Identity=24.7761194029851, Blast_Score=162, Evalue=7e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR006935 [H]

Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 75107; Mature: 75107

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVSSVFTKQLPKLWKDYEVRKEQMEMSQAIESAFQTGSNWVIEAGTGVGKSLAYLIPSA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
LFSLENECTVVVSTETKSLQDQLLYKDIPLVSEALGVPINAMVALGANNYLCKRKYNRVM
HHCCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHCCCHHHEEEECCCCHHHHHHHHHHH
ERGDFGPEMESSLPYFVNWEKQTESGIRAEYDGFLSNSFWSSVARESDNCLGRNCPNFSS
HCCCCCCCHHCCCCEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
SYYFLEKDKWKKANILIVNHHLLASHLAGDFKLLPPFSQLVIDEAHVFPEIVGKAFGSEI
CEEEEECCCCCCCCEEEEEHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHCHHH
RYEFILNLLHYLYFPEKRTGLVLKLKSNEKIIKQIEASISYANDLFRMLLSAIPLQFNQF
HHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
SSRHTERIKLDNGALEDTLADLSSTLEGLLSKYKKDSDDMEEKELALGLEMVAGNLKKVS
HCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHH
SFLTDFRLKTNPNLVFWIEPPPQMAKDPFYYLFSQPKNTDEILANTLFPNMDSVVLTSAT
HHHHHCEEECCCCEEEEECCCCCHHCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECC
LSPTAGNFQYFLKEVGTSEVKTKTLNSPFQYQTHSLLFVPKQIADPVSDPKRNKIDLSYW
CCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEECHHHCCCCCCCCCCCEEHHHH
ITRLLKLSEGDAFVLFTSNKLLSELYEEIRNLVPYPIFAQTEMGPIAAKREFLANKNSVL
HHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHCCCCCEE
FGVSSFWQGVDIKGDKLRNVIVTKLPFQVPTEPVLQAKMEDMEKKGKSPFWEMQVPKTCL
EEHHHHHCCCCCCCHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCHHHH
LLRQGFGRLIRSQSDTGMVSILDPRIHTKSYGKNVLQSLPKGVPLITEFNDLERKFHLLP
HHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHCCCC
K
C
>Mature Secondary Structure
MDVSSVFTKQLPKLWKDYEVRKEQMEMSQAIESAFQTGSNWVIEAGTGVGKSLAYLIPSA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
LFSLENECTVVVSTETKSLQDQLLYKDIPLVSEALGVPINAMVALGANNYLCKRKYNRVM
HHCCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHCCCHHHEEEECCCCHHHHHHHHHHH
ERGDFGPEMESSLPYFVNWEKQTESGIRAEYDGFLSNSFWSSVARESDNCLGRNCPNFSS
HCCCCCCCHHCCCCEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
SYYFLEKDKWKKANILIVNHHLLASHLAGDFKLLPPFSQLVIDEAHVFPEIVGKAFGSEI
CEEEEECCCCCCCCEEEEEHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHCHHH
RYEFILNLLHYLYFPEKRTGLVLKLKSNEKIIKQIEASISYANDLFRMLLSAIPLQFNQF
HHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
SSRHTERIKLDNGALEDTLADLSSTLEGLLSKYKKDSDDMEEKELALGLEMVAGNLKKVS
HCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHH
SFLTDFRLKTNPNLVFWIEPPPQMAKDPFYYLFSQPKNTDEILANTLFPNMDSVVLTSAT
HHHHHCEEECCCCEEEEECCCCCHHCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECC
LSPTAGNFQYFLKEVGTSEVKTKTLNSPFQYQTHSLLFVPKQIADPVSDPKRNKIDLSYW
CCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEECHHHCCCCCCCCCCCEEHHHH
ITRLLKLSEGDAFVLFTSNKLLSELYEEIRNLVPYPIFAQTEMGPIAAKREFLANKNSVL
HHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHCCCCCEE
FGVSSFWQGVDIKGDKLRNVIVTKLPFQVPTEPVLQAKMEDMEKKGKSPFWEMQVPKTCL
EEHHHHHCCCCCCCHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCHHHH
LLRQGFGRLIRSQSDTGMVSILDPRIHTKSYGKNVLQSLPKGVPLITEFNDLERKFHLLP
HHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]