Click here to switch to the map view.

The map label for this gene is ycfF [C]

Identifier: 183220882

GI number: 183220882

Start: 1556442

End: 1556786

Strand: Reverse

Name: ycfF [C]

Synonym: LEPBI_I1495

Alternate gene names: 183220882

Gene position: 1556786-1556442 (Counterclockwise)

Preceding gene: 183220883

Following gene: 183220881

Centisome position: 43.25

GC content: 39.42

Gene sequence:

>345_bases
ATGGAAGACTGTATTTTTTGTAAGATCATTCGCGGTGAAATACCTGCCAAAAAAGAATACGAAACTGATTCTATTTTTGT
ATTCCATGACATCACTCCACAAGCGCCCATCCATTTGCTCATCATACCCAAAGCACATATCAAAAGTATGAATGAAATTG
ATTCTCTTGACCCGAAGGTGATCCATCAAATTTTCGAAGTGATTCCCGAACTTGCCAAAAAAAACGGAATCTTTGAAAAA
GGATACCGTGTTGTCAATAATTGTGGAACCTACGGTGGACAAACTGTTGGTCATCTACACTTCCACTTGTTAGGTGGCAG
ACATCTACAATGGCCACCAGGATAA

Upstream 100 bases:

>100_bases
TTTTCTGTATTAAACGATCGATTATTACTTGGGCCTGGGGGCAATATATCAGGAACTCTGGGTGCCGCCTCACTTGTTTT
TGTTAAGGAGAAAAACTGAT

Downstream 100 bases:

>100_bases
AATTGAACCTACAATGAGAAAATTAATTTTTGGAATTATCGTTTCAGGCATTGCCATTTATTTTTTACAAAAGAACTTTG
ATATCAGTGAATTCGAACGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MEDCIFCKIIRGEIPAKKEYETDSIFVFHDITPQAPIHLLIIPKAHIKSMNEIDSLDPKVIHQIFEVIPELAKKNGIFEK
GYRVVNNCGTYGGQTVGHLHFHLLGGRHLQWPPG

Sequences:

>Translated_114_residues
MEDCIFCKIIRGEIPAKKEYETDSIFVFHDITPQAPIHLLIIPKAHIKSMNEIDSLDPKVIHQIFEVIPELAKKNGIFEK
GYRVVNNCGTYGGQTVGHLHFHLLGGRHLQWPPG
>Mature_114_residues
MEDCIFCKIIRGEIPAKKEYETDSIFVFHDITPQAPIHLLIIPKAHIKSMNEIDSLDPKVIHQIFEVIPELAKKNGIFEK
GYRVVNNCGTYGGQTVGHLHFHLLGGRHLQWPPG

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=112, Percent_Identity=49.1071428571429, Blast_Score=109, Evalue=4e-25,
Organism=Homo sapiens, GI14211923, Length=111, Percent_Identity=43.2432432432432, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1787346, Length=108, Percent_Identity=44.4444444444444, Blast_Score=92, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17506713, Length=113, Percent_Identity=52.212389380531, Blast_Score=116, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6320078, Length=104, Percent_Identity=39.4230769230769, Blast_Score=67, Evalue=4e-13,
Organism=Drosophila melanogaster, GI28574010, Length=113, Percent_Identity=46.9026548672566, Blast_Score=107, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24581222, Length=113, Percent_Identity=46.9026548672566, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 12940; Mature: 12940

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDCIFCKIIRGEIPAKKEYETDSIFVFHDITPQAPIHLLIIPKAHIKSMNEIDSLDPKV
CCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECHHHHHCHHHHCCCCHHH
IHQIFEVIPELAKKNGIFEKGYRVVNNCGTYGGQTVGHLHFHLLGGRHLQWPPG
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MEDCIFCKIIRGEIPAKKEYETDSIFVFHDITPQAPIHLLIIPKAHIKSMNEIDSLDPKV
CCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECHHHHHCHHHHCCCCHHH
IHQIFEVIPELAKKNGIFEKGYRVVNNCGTYGGQTVGHLHFHLLGGRHLQWPPG
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]