Click here to switch to the map view.

The map label for this gene is yiaN [C]

Identifier: 183220861

GI number: 183220861

Start: 1533616

End: 1534917

Strand: Reverse

Name: yiaN [C]

Synonym: LEPBI_I1474

Alternate gene names: 183220861

Gene position: 1534917-1533616 (Counterclockwise)

Preceding gene: 183220862

Following gene: 183220857

Centisome position: 42.64

GC content: 46.85

Gene sequence:

>1302_bases
ATGGGTTCTTGGGGAATACTCCTACTCTTACTTGGTCTGATTTTACTCAGACAACCACTCATCGTACTCATGGGTGCCAT
CACCGTTTTTTGTTATTACTTCTTACCAGAACCACCGCTTGAGTCCTTCCATGAACTCAATAGCATCATAGGCGATTTAT
TCTTCGCTGGTGATAAGGAAATCCTTCTTGCGATTCCCCTTTTCATCATTGCAGGAAATCTCATGACCCATGGGAGTATT
GCGCGAAGGCTCATCCGCATCGCACAAGCCATGACAGCACCGATCCCAGCAGGACTTGCCATCGCGGGAGTTTTCTCTTG
TGGTATCTTTGCTGCCATTTCGGGCTCCTCTCCCGTCACTCTGATTGCCATTGGAGGACTCATGTATCCTTCGCTTACGA
AAGCAGGATACCCCACTCAGTTTTCGATGGGACTACTTGCTTCCGGTGGAACCCTAGGGATCATCATCCCACCGAGTATC
CCAATGATCGTGTATGCGATTATGGTGGGAGTTTCGGTGACAGACCTTTTCATTGCAGGGATCGGACCTGGAATTTTACT
CATGAGTTTGCTTATGATGTATTCTGTCTTCCGTGCAGGAAAAGTGGGCCGAGGGAAATGGGATTGGGCTGAGATTCGGA
TTGCCTGGAAAGAAGGTGTACTTGCTTTGATGATGCCCGTTGTCATCCTCGGTGGGATTTACTCCGGATTTTTCACAGCA
ACAGAATCAGCAGCCATCGCTGTTTTTTATGCCATCCTCGTGGAAGTTTTCATCCACAAAGAATTAAGTTTTCCAAAAAT
TCCCAAAATCATGGCGGAAAGCGCTGAGATGCTTGGGATCTTATTTCTCATCCTCATCCTTGCGGTGAGTTTGAATAAGT
TCATGATCGAAAACGAAATCCCTCAAAACCTAGTGGCAAAAATGTCGGAACTCATTTCGAGTCCCGTCACCTTTCTCATT
GGAGTGAACATCTTGTTACTTGTTGTTGGGATGTTCATGGACATCATGAGTGCCATTCTGGTGCTTGCACCACTACTCGC
TCCGATGGCAGTGAATTACGGGATCAATCCAGTTCATTTTGGAATCATCATGATTGTAAACTTGGAGATTGGTTACCTGA
CTCCTCCAGTTGGGGTCAACCTCTTTGTGGCATCAGGGATCTTCAAACAGCCGTTAGGAAAAGTGATCCAATCTGTGGCG
CCGATTGTGGGACTATTTCTAATTGGACTTGTCCTCATCAGCTGGATCCCAGACATTTCCCTGGGATTACTTGGTGGAGA
CGCCGTCGCTCCTAGTCCTTAA

Upstream 100 bases:

>100_bases
TTTTTCCTTCTTTGATTCCTTCTGACATCAATGAAGCCACAGAGGCTTTGGAACTAGCGGAAAAAGAACTTTCCGAATCT
AACTCAGGAGGGAAACACTA

Downstream 100 bases:

>100_bases
TCCGACAGACAAAGGTTTAAGTCATTTGGTTCCTTTTGTTTTCCTTTTGGAAAGATTTGGAACCAAAAAGGTGTTATAAA
AAGAAGCTGGAGCCATCCAG

Product: putative transport system

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 432

Protein sequence:

>433_residues
MGSWGILLLLLGLILLRQPLIVLMGAITVFCYYFLPEPPLESFHELNSIIGDLFFAGDKEILLAIPLFIIAGNLMTHGSI
ARRLIRIAQAMTAPIPAGLAIAGVFSCGIFAAISGSSPVTLIAIGGLMYPSLTKAGYPTQFSMGLLASGGTLGIIIPPSI
PMIVYAIMVGVSVTDLFIAGIGPGILLMSLLMMYSVFRAGKVGRGKWDWAEIRIAWKEGVLALMMPVVILGGIYSGFFTA
TESAAIAVFYAILVEVFIHKELSFPKIPKIMAESAEMLGILFLILILAVSLNKFMIENEIPQNLVAKMSELISSPVTFLI
GVNILLLVVGMFMDIMSAILVLAPLLAPMAVNYGINPVHFGIIMIVNLEIGYLTPPVGVNLFVASGIFKQPLGKVIQSVA
PIVGLFLIGLVLISWIPDISLGLLGGDAVAPSP

Sequences:

>Translated_433_residues
MGSWGILLLLLGLILLRQPLIVLMGAITVFCYYFLPEPPLESFHELNSIIGDLFFAGDKEILLAIPLFIIAGNLMTHGSI
ARRLIRIAQAMTAPIPAGLAIAGVFSCGIFAAISGSSPVTLIAIGGLMYPSLTKAGYPTQFSMGLLASGGTLGIIIPPSI
PMIVYAIMVGVSVTDLFIAGIGPGILLMSLLMMYSVFRAGKVGRGKWDWAEIRIAWKEGVLALMMPVVILGGIYSGFFTA
TESAAIAVFYAILVEVFIHKELSFPKIPKIMAESAEMLGILFLILILAVSLNKFMIENEIPQNLVAKMSELISSPVTFLI
GVNILLLVVGMFMDIMSAILVLAPLLAPMAVNYGINPVHFGIIMIVNLEIGYLTPPVGVNLFVASGIFKQPLGKVIQSVA
PIVGLFLIGLVLISWIPDISLGLLGGDAVAPSP
>Mature_432_residues
GSWGILLLLLGLILLRQPLIVLMGAITVFCYYFLPEPPLESFHELNSIIGDLFFAGDKEILLAIPLFIIAGNLMTHGSIA
RRLIRIAQAMTAPIPAGLAIAGVFSCGIFAAISGSSPVTLIAIGGLMYPSLTKAGYPTQFSMGLLASGGTLGIIIPPSIP
MIVYAIMVGVSVTDLFIAGIGPGILLMSLLMMYSVFRAGKVGRGKWDWAEIRIAWKEGVLALMMPVVILGGIYSGFFTAT
ESAAIAVFYAILVEVFIHKELSFPKIPKIMAESAEMLGILFLILILAVSLNKFMIENEIPQNLVAKMSELISSPVTFLIG
VNILLLVVGMFMDIMSAILVLAPLLAPMAVNYGINPVHFGIIMIVNLEIGYLTPPVGVNLFVASGIFKQPLGKVIQSVAP
IVGLFLIGLVLISWIPDISLGLLGGDAVAPSP

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=417, Percent_Identity=32.8537170263789, Blast_Score=191, Evalue=6e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 46052; Mature: 45921

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSWGILLLLLGLILLRQPLIVLMGAITVFCYYFLPEPPLESFHELNSIIGDLFFAGDKE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCH
ILLAIPLFIIAGNLMTHGSIARRLIRIAQAMTAPIPAGLAIAGVFSCGIFAAISGSSPVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCCCEE
LIAIGGLMYPSLTKAGYPTQFSMGLLASGGTLGIIIPPSIPMIVYAIMVGVSVTDLFIAG
EEEECCHHCCCHHCCCCCCCHHHHHEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
IGPGILLMSLLMMYSVFRAGKVGRGKWDWAEIRIAWKEGVLALMMPVVILGGIYSGFFTA
CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
TESAAIAVFYAILVEVFIHKELSFPKIPKIMAESAEMLGILFLILILAVSLNKFMIENEI
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PQNLVAKMSELISSPVTFLIGVNILLLVVGMFMDIMSAILVLAPLLAPMAVNYGINPVHF
CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHE
GIIMIVNLEIGYLTPPVGVNLFVASGIFKQPLGKVIQSVAPIVGLFLIGLVLISWIPDIS
EEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LGLLGGDAVAPSP
HEEECCCCCCCCC
>Mature Secondary Structure 
GSWGILLLLLGLILLRQPLIVLMGAITVFCYYFLPEPPLESFHELNSIIGDLFFAGDKE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCH
ILLAIPLFIIAGNLMTHGSIARRLIRIAQAMTAPIPAGLAIAGVFSCGIFAAISGSSPVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCCCEE
LIAIGGLMYPSLTKAGYPTQFSMGLLASGGTLGIIIPPSIPMIVYAIMVGVSVTDLFIAG
EEEECCHHCCCHHCCCCCCCHHHHHEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
IGPGILLMSLLMMYSVFRAGKVGRGKWDWAEIRIAWKEGVLALMMPVVILGGIYSGFFTA
CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
TESAAIAVFYAILVEVFIHKELSFPKIPKIMAESAEMLGILFLILILAVSLNKFMIENEI
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PQNLVAKMSELISSPVTFLIGVNILLLVVGMFMDIMSAILVLAPLLAPMAVNYGINPVHF
CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHE
GIIMIVNLEIGYLTPPVGVNLFVASGIFKQPLGKVIQSVAPIVGLFLIGLVLISWIPDIS
EEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LGLLGGDAVAPSP
HEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]