Click here to switch to the map view.

The map label for this gene is cph2 [H]

Identifier: 183220727

GI number: 183220727

Start: 1391644

End: 1392705

Strand: Direct

Name: cph2 [H]

Synonym: LEPBI_I1337

Alternate gene names: 183220727

Gene position: 1391644-1392705 (Clockwise)

Preceding gene: 183220726

Following gene: 183220728

Centisome position: 38.66

GC content: 43.03

Gene sequence:

>1062_bases
TTGTCTTTTAAAGAAAACACTGATATCGTTTTTGAGCATTACGAAAAAAAAATCTACGACCAAAAACAACTACTGGAAAT
CTCCCGTGCATTAAATTCCACGTTAGACTATAAGTATTTAATCGATGCAATCCTTAATATCTGTTTGGCGCAGTTGCAGA
CCCTTCATGCGGCAATGTACCTGGAACCAGAAATTGACTTGGGGCTTTTTAAATTGGAACCCCAGTCCATCAAAGGATTT
GAGCTAAGCCCTGAAGAACAAAATTACGAAATCAAAATTGATAGCCCTCTCATCCATTATTTTGAGGAAAAACCAAAGGC
CATCACCATGGACCAAATCCTGCAGATGGAAGTTTTGAACCAAATCCCAGATATAGTATACCTTCGCAAAATGGGAGCCG
AGATCCTTGTGCCCCTGAATGCAAAGGGGAAGGTGAATGGGTTACTTGTCCTTGGGGACAAAATGACTTCCGAAGAATTT
TTGGAAGATGAAAAAGAATTTATGACCACTCTTGCAAACCTGGCAGGGATTGCTGTGGACAATGCAAGGTTGTATGAACT
TGCCACGGTGGATATGATGACGGGGCTCAAGATCCATCATTACTTCCAAACCAAATTGAAAGAGGAGATGGAACGTTGCC
GAAAAAAAGGAACAAAACTATCATTACTCTTCACTGATGTGGACAAATTCAAAACCTTCAATGATACCTATGGACACCAA
GCGGGGGACGTCGTCCTCATTGAAGTCGCAAAACAACTCATCCAAAAAGCACAACGGCACCATATCCCCGCTCGCTACGG
TGGAGAAGAGTTTTGCCTTGTGATGCCAGGCGCTTCCGAAGAAGAAGCCATTGCCAAAGGGGAAGAGATCCGTAAGGCTG
TGGAAGAGATGGTAGTCAAAAATCCGAATGATGATTCTGATTTAAAAGTGACACTTTCCGTGGGAGTTTCCAGTTTTCGA
CCAACGGACAGAAACAACAAAGATCTCATCGAACGCGCGGACAAAGCCCTTTACCAGGCGAAACATTCCGGCCGAAACCG
CACAATTTGTTATAAAGATTAG

Upstream 100 bases:

>100_bases
GCACTCATCTGAAATTTATCGATTTCCATCAAAATCTTACTTTACAGGTGTCAAATAGAGCGAATGATTCCTATCTTATA
TAGAATTCTGGCGGTGCGTT

Downstream 100 bases:

>100_bases
GAAAATTGCCGATGGGTAGAGTATGGCAGAACCTGCATACCTACTCAAAGACCTTTCGCCATCGGTTCCCTCTGATGTCT
ATGAATCGATTCGAAACAGA

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MSFKENTDIVFEHYEKKIYDQKQLLEISRALNSTLDYKYLIDAILNICLAQLQTLHAAMYLEPEIDLGLFKLEPQSIKGF
ELSPEEQNYEIKIDSPLIHYFEEKPKAITMDQILQMEVLNQIPDIVYLRKMGAEILVPLNAKGKVNGLLVLGDKMTSEEF
LEDEKEFMTTLANLAGIAVDNARLYELATVDMMTGLKIHHYFQTKLKEEMERCRKKGTKLSLLFTDVDKFKTFNDTYGHQ
AGDVVLIEVAKQLIQKAQRHHIPARYGGEEFCLVMPGASEEEAIAKGEEIRKAVEEMVVKNPNDDSDLKVTLSVGVSSFR
PTDRNNKDLIERADKALYQAKHSGRNRTICYKD

Sequences:

>Translated_353_residues
MSFKENTDIVFEHYEKKIYDQKQLLEISRALNSTLDYKYLIDAILNICLAQLQTLHAAMYLEPEIDLGLFKLEPQSIKGF
ELSPEEQNYEIKIDSPLIHYFEEKPKAITMDQILQMEVLNQIPDIVYLRKMGAEILVPLNAKGKVNGLLVLGDKMTSEEF
LEDEKEFMTTLANLAGIAVDNARLYELATVDMMTGLKIHHYFQTKLKEEMERCRKKGTKLSLLFTDVDKFKTFNDTYGHQ
AGDVVLIEVAKQLIQKAQRHHIPARYGGEEFCLVMPGASEEEAIAKGEEIRKAVEEMVVKNPNDDSDLKVTLSVGVSSFR
PTDRNNKDLIERADKALYQAKHSGRNRTICYKD
>Mature_352_residues
SFKENTDIVFEHYEKKIYDQKQLLEISRALNSTLDYKYLIDAILNICLAQLQTLHAAMYLEPEIDLGLFKLEPQSIKGFE
LSPEEQNYEIKIDSPLIHYFEEKPKAITMDQILQMEVLNQIPDIVYLRKMGAEILVPLNAKGKVNGLLVLGDKMTSEEFL
EDEKEFMTTLANLAGIAVDNARLYELATVDMMTGLKIHHYFQTKLKEEMERCRKKGTKLSLLFTDVDKFKTFNDTYGHQA
GDVVLIEVAKQLIQKAQRHHIPARYGGEEFCLVMPGASEEEAIAKGEEIRKAVEEMVVKNPNDDSDLKVTLSVGVSSFRP
TDRNNKDLIERADKALYQAKHSGRNRTICYKD

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=33.1325301204819, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=38.6503067484663, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI87082007, Length=141, Percent_Identity=37.5886524822695, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=32.7160493827161, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787262, Length=159, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787802, Length=154, Percent_Identity=36.3636363636364, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI87081881, Length=131, Percent_Identity=37.4045801526718, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=34.5454545454545, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788381, Length=171, Percent_Identity=26.9005847953216, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788085, Length=165, Percent_Identity=30.3030303030303, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI87081974, Length=158, Percent_Identity=25.3164556962025, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787056, Length=144, Percent_Identity=35.4166666666667, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI87081977, Length=163, Percent_Identity=29.4478527607362, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787541, Length=169, Percent_Identity=26.0355029585799, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 40418; Mature: 40287

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFKENTDIVFEHYEKKIYDQKQLLEISRALNSTLDYKYLIDAILNICLAQLQTLHAAMY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHE
LEPEIDLGLFKLEPQSIKGFELSPEEQNYEIKIDSPLIHYFEEKPKAITMDQILQMEVLN
ECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCEECHHHHHHHHHHH
QIPDIVYLRKMGAEILVPLNAKGKVNGLLVLGDKMTSEEFLEDEKEFMTTLANLAGIAVD
HCCHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEEC
NARLYELATVDMMTGLKIHHYFQTKLKEEMERCRKKGTKLSLLFTDVDKFKTFNDTYGHQ
CCEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHCCCHHCCCC
AGDVVLIEVAKQLIQKAQRHHIPARYGGEEFCLVMPGASEEEAIAKGEEIRKAVEEMVVK
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHCHHHHHHHHHHHHHC
NPNDDSDLKVTLSVGVSSFRPTDRNNKDLIERADKALYQAKHSGRNRTICYKD
CCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC
>Mature Secondary Structure 
SFKENTDIVFEHYEKKIYDQKQLLEISRALNSTLDYKYLIDAILNICLAQLQTLHAAMY
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHE
LEPEIDLGLFKLEPQSIKGFELSPEEQNYEIKIDSPLIHYFEEKPKAITMDQILQMEVLN
ECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCEECHHHHHHHHHHH
QIPDIVYLRKMGAEILVPLNAKGKVNGLLVLGDKMTSEEFLEDEKEFMTTLANLAGIAVD
HCCHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEEC
NARLYELATVDMMTGLKIHHYFQTKLKEEMERCRKKGTKLSLLFTDVDKFKTFNDTYGHQ
CCEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHCCCHHCCCC
AGDVVLIEVAKQLIQKAQRHHIPARYGGEEFCLVMPGASEEEAIAKGEEIRKAVEEMVVK
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHCHHHHHHHHHHHHHC
NPNDDSDLKVTLSVGVSSFRPTDRNNKDLIERADKALYQAKHSGRNRTICYKD
CCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]