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The map label for this gene is yggS [C]

Identifier: 183220725

GI number: 183220725

Start: 1389927

End: 1390625

Strand: Direct

Name: yggS [C]

Synonym: LEPBI_I1335

Alternate gene names: 183220725

Gene position: 1389927-1390625 (Clockwise)

Preceding gene: 183220724

Following gene: 183220726

Centisome position: 38.61

GC content: 37.77

Gene sequence:

>699_bases
GTGTCAGATTACATTTCTGTATACCAATCCCTCCAAAACGAACTGAATTCCCTCTCGAAAGGGATACCACCAACACTCAT
TGCAGTCTCCAAAACAAAACCATACCAAGTGGTAAGAGATGCATACATGCAAGGCATCCGTGAATTCGGTGAAAACTATC
TTCCAGAAGCCATTGAAAAATTTACAAAATTAAGAGAAGAGTTTCCTGAATCTGTAAATACAGTGAATTTACATCACATT
GGACCTGTACAATCCGGAACCTTACGAAAGTTATTTGGTATCTTTTCTTACACTCATGGTGTGGGAACGTTTTCAAGTCT
CACCGAATTACAAAAACGTGCCGAAAAAGAAAAAAAAACAATCCGGTATTTTTTACAAACAAACCTGACGGCCGAAAGCA
CCAAACATGGATTCAGTTTGGAGACCCTATTGGAAAAAAAAGAGGAATTATCTCTTTACCAAAATGAATTTTGTATTTGG
GAAGGGTTTATGGGAATGGGACCATCTTCGGGAGACCTTCTCCAAACAAAGGAAGTATTTTCTAAATTAACTTCTTTTCG
TGATACACATTTTCCCAATTTAAAACTTTCTATGGGAATGAGCGGAGATTATCAATTAGCAGCAGAACTTGGATCCAACT
TTGTTCGGATCGGATCAAAAATTTTTGGAGATAGGGATTATGGCACACACTCCGTTTAA

Upstream 100 bases:

>100_bases
TAGAACAAAAACTAAACTCACAAAATGATCGGAATGAAAAACGATTTTTGGAAATCGAACGACGCATTGATAGTTTAGAA
AAAGTTTTAGCAAAGTAATC

Downstream 100 bases:

>100_bases
AACAGTGGGAATGGTAGGACTTGGGAAAATGGGAGGTGCTGTGGCAAAGGCGCTGGTAAACCAAGGAACAAAAGTGTTTG
CCTTTGATCCAAACCTGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSDYISVYQSLQNELNSLSKGIPPTLIAVSKTKPYQVVRDAYMQGIREFGENYLPEAIEKFTKLREEFPESVNTVNLHHI
GPVQSGTLRKLFGIFSYTHGVGTFSSLTELQKRAEKEKKTIRYFLQTNLTAESTKHGFSLETLLEKKEELSLYQNEFCIW
EGFMGMGPSSGDLLQTKEVFSKLTSFRDTHFPNLKLSMGMSGDYQLAAELGSNFVRIGSKIFGDRDYGTHSV

Sequences:

>Translated_232_residues
MSDYISVYQSLQNELNSLSKGIPPTLIAVSKTKPYQVVRDAYMQGIREFGENYLPEAIEKFTKLREEFPESVNTVNLHHI
GPVQSGTLRKLFGIFSYTHGVGTFSSLTELQKRAEKEKKTIRYFLQTNLTAESTKHGFSLETLLEKKEELSLYQNEFCIW
EGFMGMGPSSGDLLQTKEVFSKLTSFRDTHFPNLKLSMGMSGDYQLAAELGSNFVRIGSKIFGDRDYGTHSV
>Mature_231_residues
SDYISVYQSLQNELNSLSKGIPPTLIAVSKTKPYQVVRDAYMQGIREFGENYLPEAIEKFTKLREEFPESVNTVNLHHIG
PVQSGTLRKLFGIFSYTHGVGTFSSLTELQKRAEKEKKTIRYFLQTNLTAESTKHGFSLETLLEKKEELSLYQNEFCIWE
GFMGMGPSSGDLLQTKEVFSKLTSFRDTHFPNLKLSMGMSGDYQLAAELGSNFVRIGSKIFGDRDYGTHSV

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=244, Percent_Identity=32.7868852459016, Blast_Score=99, Evalue=2e-21,
Organism=Escherichia coli, GI1789321, Length=209, Percent_Identity=32.5358851674641, Blast_Score=103, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI17533025, Length=249, Percent_Identity=28.1124497991968, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6319435, Length=243, Percent_Identity=31.2757201646091, Blast_Score=85, Evalue=1e-17,
Organism=Drosophila melanogaster, GI45550861, Length=224, Percent_Identity=32.1428571428571, Blast_Score=87, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26282; Mature: 26151

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDYISVYQSLQNELNSLSKGIPPTLIAVSKTKPYQVVRDAYMQGIREFGENYLPEAIEK
CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTKLREEFPESVNTVNLHHIGPVQSGTLRKLFGIFSYTHGVGTFSSLTELQKRAEKEKKT
HHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IRYFLQTNLTAESTKHGFSLETLLEKKEELSLYQNEFCIWEGFMGMGPSSGDLLQTKEVF
HHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
SKLTSFRDTHFPNLKLSMGMSGDYQLAAELGSNFVRIGSKIFGDRDYGTHSV
HHHHHHHCCCCCCCEEECCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SDYISVYQSLQNELNSLSKGIPPTLIAVSKTKPYQVVRDAYMQGIREFGENYLPEAIEK
CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTKLREEFPESVNTVNLHHIGPVQSGTLRKLFGIFSYTHGVGTFSSLTELQKRAEKEKKT
HHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IRYFLQTNLTAESTKHGFSLETLLEKKEELSLYQNEFCIWEGFMGMGPSSGDLLQTKEVF
HHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
SKLTSFRDTHFPNLKLSMGMSGDYQLAAELGSNFVRIGSKIFGDRDYGTHSV
HHHHHHHCCCCCCCEEECCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8982386 [H]