| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is ctpA [H]
Identifier: 183220708
GI number: 183220708
Start: 1373867
End: 1375237
Strand: Direct
Name: ctpA [H]
Synonym: LEPBI_I1318
Alternate gene names: 183220708
Gene position: 1373867-1375237 (Clockwise)
Preceding gene: 183220707
Following gene: 183220709
Centisome position: 38.17
GC content: 37.86
Gene sequence:
>1371_bases ATGAATAAAGTCAAATTCTCCGAACGCTTCCTTTGGATCAGCGTCACCTTATCTTTGCTTGGTTTGGTTTTTGTTCTAAG CATTGAAAAAGTAAAAGCAATCTCTTCCGATGGAGAAAAATACCTTCAAATTTTACATGAAGTGGTCGCTTATATTGAAA ACGACTTTGTCGAACCACAAGAAGAAAAAAAGATTTATATCGGAGCGATCCAAGGTGCCTTACAAAGTTTAGGTGATCCG CATACTCGTTTCATTGATGTTGATGAATACAAAGAACTACAAAATGAAACGAAAGGTAGTTTTGGTGGCATTGGAGTAGA ACTCAATTACCAAGAAAATGCATTTGTCATCGTTGCTCCCATTGAAGGGACTCCCGCCTGGAAAGCAGGCCTTTTGCCTC AGGACAAAATCATTGAAATCAATGGAAAACCAGTCAAATCACTATCGCAAGCAGAATCGTTTGCGATGATGCGCGGTGAT GTGGGAACATCCATTTCGATGAAAATCGAACGAAAGGGCACAAAAGAACCTTTTATTGTCAACTTAGTCAGAGAACTCAT TCAAATTCGGTTCCTCCGATCGTTTTACCTTTCTGAAAAAGAAACCGGATATATCAAACTGGTTCAGTTTATGGGAAAGG ATACGGGCAAAGAATTTGCCACTGCGGTCAAAAACCTAAAAGACTCTGGAGCAAAAAAGCTCATTATCGATTTAAGAATG AATCCAGGTGGTTTACTTGATTTAGCCATTGAACTTGCTGATTTATTTCTCCCACCTAACTCAGACATTGTGTCTGTTAA GGGGAGAGGGGGAGTTCTCATCAAAAGTTTTAAATCAGAATCAAAAGAGCTTAAGTATTTGGATTTACCTGTGGCGATTT TAGTCAATGGAGGTTCTGCAAGTGCTTCTGAAATTTTAGCTGGTGCCCTAAAAGATCACAAACGAGCGATAATCGTCGGT ACACAAAGTTTTGGAAAAGGTAGTGTACAATCGATCATTCCACTTTCGTTTGGAGCAGGTGTTGCCATCACAATTCAAAA GTATTACACTCCTTCAGGAATTTCTATTCATGGGAAAGGAATCACTCCGGATCATGTGATTAATCCCGTATCTGCAAATG AAGATGAGAAATATGCATTGGAAAAACTATTTAAGAAAAATTTGATTCGTCCGTTTTTAGAATCACACTCGGAATTTGAT GAAGATTCGATTTCTGATTTTAAAACTTTACTCAAAAAAGAAAACTTAAAGATATCCGATTCTGTCGTGAAGATTTTTTT ATTCAATGAAATGAGAATGGGTACTTCCCAAACCAAACCTAGACTAGATTTGGACATCCAGTTATCCGAGGCTATCAACC TCTTAAAATAA
Upstream 100 bases:
>100_bases CTCTTCGAAGAGGCTTGTGACGTTTACCGTCTGTCGATCCCTGAAGCAAAAGAAATGTTAAAAAAAGACAACAAAGCATT GTTTGAGTCAATATATGGAA
Downstream 100 bases:
>100_bases ATGGTCTACGGATTAGGCATTGAATCCAGTTGCGATGAAACATCCATTGCCATTGTTAGAGATGGCAATGAAGTTGTATC ATTAAAAGTGTATAGCCAAA
Product: putative carboxy-terminal processing protease
Products: NA
Alternate protein names: C-terminal-processing protease [H]
Number of amino acids: Translated: 456; Mature: 456
Protein sequence:
>456_residues MNKVKFSERFLWISVTLSLLGLVFVLSIEKVKAISSDGEKYLQILHEVVAYIENDFVEPQEEKKIYIGAIQGALQSLGDP HTRFIDVDEYKELQNETKGSFGGIGVELNYQENAFVIVAPIEGTPAWKAGLLPQDKIIEINGKPVKSLSQAESFAMMRGD VGTSISMKIERKGTKEPFIVNLVRELIQIRFLRSFYLSEKETGYIKLVQFMGKDTGKEFATAVKNLKDSGAKKLIIDLRM NPGGLLDLAIELADLFLPPNSDIVSVKGRGGVLIKSFKSESKELKYLDLPVAILVNGGSASASEILAGALKDHKRAIIVG TQSFGKGSVQSIIPLSFGAGVAITIQKYYTPSGISIHGKGITPDHVINPVSANEDEKYALEKLFKKNLIRPFLESHSEFD EDSISDFKTLLKKENLKISDSVVKIFLFNEMRMGTSQTKPRLDLDIQLSEAINLLK
Sequences:
>Translated_456_residues MNKVKFSERFLWISVTLSLLGLVFVLSIEKVKAISSDGEKYLQILHEVVAYIENDFVEPQEEKKIYIGAIQGALQSLGDP HTRFIDVDEYKELQNETKGSFGGIGVELNYQENAFVIVAPIEGTPAWKAGLLPQDKIIEINGKPVKSLSQAESFAMMRGD VGTSISMKIERKGTKEPFIVNLVRELIQIRFLRSFYLSEKETGYIKLVQFMGKDTGKEFATAVKNLKDSGAKKLIIDLRM NPGGLLDLAIELADLFLPPNSDIVSVKGRGGVLIKSFKSESKELKYLDLPVAILVNGGSASASEILAGALKDHKRAIIVG TQSFGKGSVQSIIPLSFGAGVAITIQKYYTPSGISIHGKGITPDHVINPVSANEDEKYALEKLFKKNLIRPFLESHSEFD EDSISDFKTLLKKENLKISDSVVKIFLFNEMRMGTSQTKPRLDLDIQLSEAINLLK >Mature_456_residues MNKVKFSERFLWISVTLSLLGLVFVLSIEKVKAISSDGEKYLQILHEVVAYIENDFVEPQEEKKIYIGAIQGALQSLGDP HTRFIDVDEYKELQNETKGSFGGIGVELNYQENAFVIVAPIEGTPAWKAGLLPQDKIIEINGKPVKSLSQAESFAMMRGD VGTSISMKIERKGTKEPFIVNLVRELIQIRFLRSFYLSEKETGYIKLVQFMGKDTGKEFATAVKNLKDSGAKKLIIDLRM NPGGLLDLAIELADLFLPPNSDIVSVKGRGGVLIKSFKSESKELKYLDLPVAILVNGGSASASEILAGALKDHKRAIIVG TQSFGKGSVQSIIPLSFGAGVAITIQKYYTPSGISIHGKGITPDHVINPVSANEDEKYALEKLFKKNLIRPFLESHSEFD EDSISDFKTLLKKENLKISDSVVKIFLFNEMRMGTSQTKPRLDLDIQLSEAINLLK
Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1788134, Length=323, Percent_Identity=32.5077399380805, Blast_Score=115, Evalue=5e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 [H]
Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]
EC number: =3.4.21.102 [H]
Molecular weight: Translated: 50447; Mature: 50447
Theoretical pI: Translated: 7.85; Mature: 7.85
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKVKFSERFLWISVTLSLLGLVFVLSIEKVKAISSDGEKYLQILHEVVAYIENDFVEPQ CCCCCHHHCEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC EEKKIYIGAIQGALQSLGDPHTRFIDVDEYKELQNETKGSFGGIGVELNYQENAFVIVAP HHCEEEEEHHHHHHHHCCCCCCEEEEHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEE IEGTPAWKAGLLPQDKIIEINGKPVKSLSQAESFAMMRGDVGTSISMKIERKGTKEPFIV CCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHH NLVRELIQIRFLRSFYLSEKETGYIKLVQFMGKDTGKEFATAVKNLKDSGAKKLIIDLRM HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEEC NPGGLLDLAIELADLFLPPNSDIVSVKGRGGVLIKSFKSESKELKYLDLPVAILVNGGSA CCCCHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCCCCCCEEEECCEEEEEECCCC SASEILAGALKDHKRAIIVGTQSFGKGSVQSIIPLSFGAGVAITIQKYYTPSGISIHGKG CHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCEEECCC ITPDHVINPVSANEDEKYALEKLFKKNLIRPFLESHSEFDEDSISDFKTLLKKENLKISD CCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEECH SVVKIFLFNEMRMGTSQTKPRLDLDIQLSEAINLLK HEEEEEEEHHHHCCCCCCCCCEEEEEEHHHHHHHCC >Mature Secondary Structure MNKVKFSERFLWISVTLSLLGLVFVLSIEKVKAISSDGEKYLQILHEVVAYIENDFVEPQ CCCCCHHHCEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC EEKKIYIGAIQGALQSLGDPHTRFIDVDEYKELQNETKGSFGGIGVELNYQENAFVIVAP HHCEEEEEHHHHHHHHCCCCCCEEEEHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEE IEGTPAWKAGLLPQDKIIEINGKPVKSLSQAESFAMMRGDVGTSISMKIERKGTKEPFIV CCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHH NLVRELIQIRFLRSFYLSEKETGYIKLVQFMGKDTGKEFATAVKNLKDSGAKKLIIDLRM HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEEC NPGGLLDLAIELADLFLPPNSDIVSVKGRGGVLIKSFKSESKELKYLDLPVAILVNGGSA CCCCHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCCCCCCEEEECCEEEEEECCCC SASEILAGALKDHKRAIIVGTQSFGKGSVQSIIPLSFGAGVAITIQKYYTPSGISIHGKG CHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCEEECCC ITPDHVINPVSANEDEKYALEKLFKKNLIRPFLESHSEFDEDSISDFKTLLKKENLKISD CCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEECH SVVKIFLFNEMRMGTSQTKPRLDLDIQLSEAINLLK HEEEEEEEHHHHCCCCCCCCCEEEEEEHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9141685 [H]