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The map label for this gene is rarA [H]

Identifier: 183220685

GI number: 183220685

Start: 1349946

End: 1351205

Strand: Direct

Name: rarA [H]

Synonym: LEPBI_I1295

Alternate gene names: 183220685

Gene position: 1349946-1351205 (Clockwise)

Preceding gene: 183220684

Following gene: 183220686

Centisome position: 37.5

GC content: 46.11

Gene sequence:

>1260_bases
TTGGATTCACTTTTTTCAAATTCAAAACAGGTGCCACTCGCCCATTTGGTGCGACCCAAAACATGGTCGGAATTTGTGGG
CCAAACCAAAGTGGTGGCGGCACTTCGTTCCATCACAAAACCCACCTCTATTTTGTTTTACGGTCCACCGGGGACAGGGA
AAACAACTCTCGCACACCTCCTTGCTGAGTCTTGGAAATTAGAAAAACGGTATTTGAGTTGTGTGACAAGTGGAGTGAAA
GAAGTTCGCGAAGTTTTAGAAGAGGGAAAACGCCTCGGAACCATTGTCCTATTTTTAGATGAAATCCATCGTTTCTCTTC
TTCCCAACAAGATGCCTTGTTGTCGGCTGTGGAAGAAGGGGAGATCATCCTCATTGCCGCCACAACTGAAAATCCTAGTT
TTCGAGTGAACAAAGCCCTCCTCTCAAGGATGCTTGTTTACCGACTGACAACTCTTACTGAAGAGGAAGAGGACCAAATC
TTTTTGTCATGTTTAGAAAAACAAAACACAAACCGAACCATCTCGGAAACGGTAAAACAGGAACTCTTTCGAAGGAGTGC
GGGGGATGCAAGAAAACTCCTTGGGTATTTGGAACGGATCCTTTTTGCCACAAAGGAAGGAGAGGCCATTACTGATGAAA
GGCTTTCTGAAATTTTAGGTGATACCCTTGTCACTTATGATAAAAATAGTGAAAGCCATTACGACATCATTTCCGCCTTC
ATCAAGTCCTTACGAGGCAGTGACCCAGATGCCGCATTATTCTATTTGGCACTCATGCTCGAAGGAGGAGAAGACCCACT
TTTTATTGCCCGGAGGCTTGTGATTTTTGCAAGCGAAGATGTGGGGAATGCGAGTGTGCATGCCCTCCCTCTTGCCATCG
CTACTTGGCAGGCTGTCGAACGAGTGGGAATGCCCGAAGGTAGGATCCCCCTTGGCCAATGTACCACCTTTTTGGCTTCC
GCACCTAAATCTAATGCGAGTTATGTGGCAATCAACCAGGCCTTGTCCTATGTGAAACAAAGGAACCGTTCCTTCCAAAT
CCCAAATCACTTAAGGAACGCACCCACCGTGACGCATAAAAACGAAGGAGCGGGAGTCGGATACAAATACCCACATGATT
TCCCAGGACATTTCCTGAAAGAACGATACTTCCCGGAGTCCTTTTATCCAAACCCTCCTTCCTTTTATGAACCCACAAAC
CAAGGGATGGAAAAAAATCTGAAAGAACAATTGGAGCGTTTGTGGGGGGACCGTTATTGA

Upstream 100 bases:

>100_bases
GAGAGATCACTCATCTGTTGTAATTCCGGTTGTGATGTTTGTAATGAAACCATATACAATTGTTATGTGGCAGTGAAAAA
AGAATTGGGAATACATTAAA

Downstream 100 bases:

>100_bases
GAGTTTATCTCAAAAATTGGACTTCTCCCTACAAATCTCGAAAAATACACGAAAACAAAGGGGAAATTCTTTCTCATCTT
GACAACTAACCCCTTTCATG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MDSLFSNSKQVPLAHLVRPKTWSEFVGQTKVVAALRSITKPTSILFYGPPGTGKTTLAHLLAESWKLEKRYLSCVTSGVK
EVREVLEEGKRLGTIVLFLDEIHRFSSSQQDALLSAVEEGEIILIAATTENPSFRVNKALLSRMLVYRLTTLTEEEEDQI
FLSCLEKQNTNRTISETVKQELFRRSAGDARKLLGYLERILFATKEGEAITDERLSEILGDTLVTYDKNSESHYDIISAF
IKSLRGSDPDAALFYLALMLEGGEDPLFIARRLVIFASEDVGNASVHALPLAIATWQAVERVGMPEGRIPLGQCTTFLAS
APKSNASYVAINQALSYVKQRNRSFQIPNHLRNAPTVTHKNEGAGVGYKYPHDFPGHFLKERYFPESFYPNPPSFYEPTN
QGMEKNLKEQLERLWGDRY

Sequences:

>Translated_419_residues
MDSLFSNSKQVPLAHLVRPKTWSEFVGQTKVVAALRSITKPTSILFYGPPGTGKTTLAHLLAESWKLEKRYLSCVTSGVK
EVREVLEEGKRLGTIVLFLDEIHRFSSSQQDALLSAVEEGEIILIAATTENPSFRVNKALLSRMLVYRLTTLTEEEEDQI
FLSCLEKQNTNRTISETVKQELFRRSAGDARKLLGYLERILFATKEGEAITDERLSEILGDTLVTYDKNSESHYDIISAF
IKSLRGSDPDAALFYLALMLEGGEDPLFIARRLVIFASEDVGNASVHALPLAIATWQAVERVGMPEGRIPLGQCTTFLAS
APKSNASYVAINQALSYVKQRNRSFQIPNHLRNAPTVTHKNEGAGVGYKYPHDFPGHFLKERYFPESFYPNPPSFYEPTN
QGMEKNLKEQLERLWGDRY
>Mature_419_residues
MDSLFSNSKQVPLAHLVRPKTWSEFVGQTKVVAALRSITKPTSILFYGPPGTGKTTLAHLLAESWKLEKRYLSCVTSGVK
EVREVLEEGKRLGTIVLFLDEIHRFSSSQQDALLSAVEEGEIILIAATTENPSFRVNKALLSRMLVYRLTTLTEEEEDQI
FLSCLEKQNTNRTISETVKQELFRRSAGDARKLLGYLERILFATKEGEAITDERLSEILGDTLVTYDKNSESHYDIISAF
IKSLRGSDPDAALFYLALMLEGGEDPLFIARRLVIFASEDVGNASVHALPLAIATWQAVERVGMPEGRIPLGQCTTFLAS
APKSNASYVAINQALSYVKQRNRSFQIPNHLRNAPTVTHKNEGAGVGYKYPHDFPGHFLKERYFPESFYPNPPSFYEPTN
QGMEKNLKEQLERLWGDRY

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=430, Percent_Identity=39.0697674418605, Blast_Score=257, Evalue=1e-68,
Organism=Homo sapiens, GI18426904, Length=430, Percent_Identity=35.3488372093023, Blast_Score=214, Evalue=2e-55,
Organism=Escherichia coli, GI1787119, Length=427, Percent_Identity=40.0468384074941, Blast_Score=301, Evalue=4e-83,
Organism=Saccharomyces cerevisiae, GI6324111, Length=430, Percent_Identity=37.906976744186, Blast_Score=258, Evalue=8e-70,
Organism=Saccharomyces cerevisiae, GI6324039, Length=233, Percent_Identity=24.4635193133047, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47130; Mature: 47130

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSLFSNSKQVPLAHLVRPKTWSEFVGQTKVVAALRSITKPTSILFYGPPGTGKTTLAHL
CCCCCCCCCCCCHHHHCCCCHHHHHHCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
LAESWKLEKRYLSCVTSGVKEVREVLEEGKRLGTIVLFLDEIHRFSSSQQDALLSAVEEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
EIILIAATTENPSFRVNKALLSRMLVYRLTTLTEEEEDQIFLSCLEKQNTNRTISETVKQ
CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHH
ELFRRSAGDARKLLGYLERILFATKEGEAITDERLSEILGDTLVTYDKNSESHYDIISAF
HHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHH
IKSLRGSDPDAALFYLALMLEGGEDPLFIARRLVIFASEDVGNASVHALPLAIATWQAVE
HHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHH
RVGMPEGRIPLGQCTTFLASAPKSNASYVAINQALSYVKQRNRSFQIPNHLRNAPTVTHK
HCCCCCCCCCHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCC
NEGAGVGYKYPHDFPGHFLKERYFPESFYPNPPSFYEPTNQGMEKNLKEQLERLWGDRY
CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDSLFSNSKQVPLAHLVRPKTWSEFVGQTKVVAALRSITKPTSILFYGPPGTGKTTLAHL
CCCCCCCCCCCCHHHHCCCCHHHHHHCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
LAESWKLEKRYLSCVTSGVKEVREVLEEGKRLGTIVLFLDEIHRFSSSQQDALLSAVEEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
EIILIAATTENPSFRVNKALLSRMLVYRLTTLTEEEEDQIFLSCLEKQNTNRTISETVKQ
CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHH
ELFRRSAGDARKLLGYLERILFATKEGEAITDERLSEILGDTLVTYDKNSESHYDIISAF
HHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHH
IKSLRGSDPDAALFYLALMLEGGEDPLFIARRLVIFASEDVGNASVHALPLAIATWQAVE
HHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHH
RVGMPEGRIPLGQCTTFLASAPKSNASYVAINQALSYVKQRNRSFQIPNHLRNAPTVTHK
HCCCCCCCCCHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCC
NEGAGVGYKYPHDFPGHFLKERYFPESFYPNPPSFYEPTNQGMEKNLKEQLERLWGDRY
CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]