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The map label for this gene is yebA [H]

Identifier: 183220523

GI number: 183220523

Start: 1171483

End: 1172268

Strand: Reverse

Name: yebA [H]

Synonym: LEPBI_I1124

Alternate gene names: 183220523

Gene position: 1172268-1171483 (Counterclockwise)

Preceding gene: 183220524

Following gene: 183220522

Centisome position: 32.57

GC content: 45.55

Gene sequence:

>786_bases
ATGAAGCGAAACCGCAGTTACTATATCATACTGGTCCTAATCCTCTTTGTCGTGACCTATTCGGCCTATGCGGCATACCA
AAAACAAAAGAACGGTCCCGTATTTTTGGACAACCATGTCTTCCAACGGTATAACGACCAGTGGGGACTTTGGGTCGACC
TATACGCCGAGAAAAAATCCCTTCTCGAGAAGGCATCTGAATTTGGAATCCTTGCCCAAGAGGTAATGGAAATCAACCAT
GTGACAGAAGCCGAGCTCAAACGATTGAAACGGTCTTTATTTTTTCCTTACTCCGCAGAATACATGCGAAACCTCCAAGA
AAAGGAACTCTTTCGCGAAACCATTGAATCACCCATTGACCAATTCATTTGGCCTGTCCTTCCCAACAACAAATCTAGGA
TCTCGTCTCGGATTGGAAGGCGCTGGAACACTTGGCATACAGGTCTCGACATTGCCATCCCCAAAAATTCGATCGTCCTT
GCGGCGGCGGATGGTGTGGTGGAAGAAGCTGGCAGGGGTGGTGATTATGGACTTGCTGTCAAAATTTACCACCATGATAT
GAACCATTTCCATACAGTGTATGGTCACAACCAAGAGTTACTCGTGAAACCAGGTGATGTGGTGAAAAAAGGACAGATCA
TTGCGTTTTCTGGGAACACAGGAAAGTCAACAGGACCTCACGTCCATTTCGAAGTCCGATTCCACAATGTGTATTTGAAT
CCAGAAAACTTTCTCACTCCCTTTGAAGAAGGAGTTGCCACAAACCTAGTTGGATTTGCAGACTAA

Upstream 100 bases:

>100_bases
TAAAAGCCATGTTTGAGGCAAGATTCGAGCCTCTTCGCCTTGACCAGGCAAGGGGTCGTGAGAATTTGGCATTGCACCAT
AGTTTTTGAGGCGAAATGAG

Downstream 100 bases:

>100_bases
GTATTTGTGACACACCTTACAAAGAACAGTTGGACAGATGAAATTTATGTCCGTCTGACAACACTCATCCCTAAAAGAAC
AGGCATTGTTTGTTTTGATT

Product: putative metalloendopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MKRNRSYYIILVLILFVVTYSAYAAYQKQKNGPVFLDNHVFQRYNDQWGLWVDLYAEKKSLLEKASEFGILAQEVMEINH
VTEAELKRLKRSLFFPYSAEYMRNLQEKELFRETIESPIDQFIWPVLPNNKSRISSRIGRRWNTWHTGLDIAIPKNSIVL
AAADGVVEEAGRGGDYGLAVKIYHHDMNHFHTVYGHNQELLVKPGDVVKKGQIIAFSGNTGKSTGPHVHFEVRFHNVYLN
PENFLTPFEEGVATNLVGFAD

Sequences:

>Translated_261_residues
MKRNRSYYIILVLILFVVTYSAYAAYQKQKNGPVFLDNHVFQRYNDQWGLWVDLYAEKKSLLEKASEFGILAQEVMEINH
VTEAELKRLKRSLFFPYSAEYMRNLQEKELFRETIESPIDQFIWPVLPNNKSRISSRIGRRWNTWHTGLDIAIPKNSIVL
AAADGVVEEAGRGGDYGLAVKIYHHDMNHFHTVYGHNQELLVKPGDVVKKGQIIAFSGNTGKSTGPHVHFEVRFHNVYLN
PENFLTPFEEGVATNLVGFAD
>Mature_261_residues
MKRNRSYYIILVLILFVVTYSAYAAYQKQKNGPVFLDNHVFQRYNDQWGLWVDLYAEKKSLLEKASEFGILAQEVMEINH
VTEAELKRLKRSLFFPYSAEYMRNLQEKELFRETIESPIDQFIWPVLPNNKSRISSRIGRRWNTWHTGLDIAIPKNSIVL
AAADGVVEEAGRGGDYGLAVKIYHHDMNHFHTVYGHNQELLVKPGDVVKKGQIIAFSGNTGKSTGPHVHFEVRFHNVYLN
PENFLTPFEEGVATNLVGFAD

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=107, Percent_Identity=44.8598130841121, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789099, Length=101, Percent_Identity=40.5940594059406, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 30034; Mature: 30034

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRNRSYYIILVLILFVVTYSAYAAYQKQKNGPVFLDNHVFQRYNDQWGLWVDLYAEKKS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHCCCCCEEEEEHHHHHH
LLEKASEFGILAQEVMEINHVTEAELKRLKRSLFFPYSAEYMRNLQEKELFRETIESPID
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHH
QFIWPVLPNNKSRISSRIGRRWNTWHTGLDIAIPKNSIVLAAADGVVEEAGRGGDYGLAV
HHCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEECCCHHHHCCCCCCCEEEE
KIYHHDMNHFHTVYGHNQELLVKPGDVVKKGQIIAFSGNTGKSTGPHVHFEVRFHNVYLN
EEEECCCCCEEHEECCCCEEEECCCCCEECCEEEEEECCCCCCCCCEEEEEEEEEEEEEC
PENFLTPFEEGVATNLVGFAD
CHHHCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MKRNRSYYIILVLILFVVTYSAYAAYQKQKNGPVFLDNHVFQRYNDQWGLWVDLYAEKKS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHCCCCCEEEEEHHHHHH
LLEKASEFGILAQEVMEINHVTEAELKRLKRSLFFPYSAEYMRNLQEKELFRETIESPID
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHH
QFIWPVLPNNKSRISSRIGRRWNTWHTGLDIAIPKNSIVLAAADGVVEEAGRGGDYGLAV
HHCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEECCCHHHHCCCCCCCEEEE
KIYHHDMNHFHTVYGHNQELLVKPGDVVKKGQIIAFSGNTGKSTGPHVHFEVRFHNVYLN
EEEECCCCCEEHEECCCCEEEECCCCCEECCEEEEEECCCCCCCCCEEEEEEEEEEEEEC
PENFLTPFEEGVATNLVGFAD
CHHHCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]