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The map label for this gene is ydcN [H]

Identifier: 183220520

GI number: 183220520

Start: 1169303

End: 1169926

Strand: Reverse

Name: ydcN [H]

Synonym: LEPBI_I1121

Alternate gene names: 183220520

Gene position: 1169926-1169303 (Counterclockwise)

Preceding gene: 183220521

Following gene: 183220519

Centisome position: 32.5

GC content: 42.31

Gene sequence:

>624_bases
ATGGTCAGTAAAGTAGAACAAAGTAGTGACGGATTAGATCCATTAATTTCAGAATCAGGCGACTATATAACAGACGTCGT
CAAAGAAAATCTGAAACTCATCCGTCATACCAAAGGATTTTCCTTGGACAAACTCGCGAACCGTTGTGGTGTGAGCCGAG
CGATGTTGTCTCAAATTGAACAAGGGAAATCAGTGCCGACCATTTCTGTTTTGTGGAAAATCGCCAACGGACTCAATGTC
CCCTTCTCTGAACTTTTGAAGGAAAAAAACCAAGACGGAATCCATATCCTCAAAGCAGAAAATTCCAAAGTTCTTTATTC
CAATTCAAAGGTGTTTGCAAGCCGAGCCCTGTTTCCCTTCCTCGGAAACCGCAAAACAGAATTTTACGAACTCATTTTAA
AACCAGGTGGCCATGAAGTGGCAGAACCACACAAAACAGGGACAACTGAAAACCTCGTTGTGGTATCTGGAAAACTTCGT
TTGCGTGTAGGGGAAAAAGTGGTCGAACTCGAACCAAAAGACTCCGTGTTTTTTAAGGCAGATGTCTCACATGAATATTC
CAATCCCACGGATCAGGAAACACTGATGTACTTGGTGATGGACTATACAGACGAAATAGGTTAA

Upstream 100 bases:

>100_bases
AGGAATGAAGTTACCTCCTGTATTTGTCATCGAAGAGAAAAAAGAAAGGCACAAACGATAGTTTCTTGACAGTACCTCTG
TTATATTGGACGCTTGGCCA

Downstream 100 bases:

>100_bases
ATTTGGAATATAGAGAATTAAAAGTCAATTTACCAAAAGAATTATCAGATCCGTTTTACGAACTCCTCGATTCTTTACAA
TGTGCTGGTTATTACGAAAT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MVSKVEQSSDGLDPLISESGDYITDVVKENLKLIRHTKGFSLDKLANRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNV
PFSELLKEKNQDGIHILKAENSKVLYSNSKVFASRALFPFLGNRKTEFYELILKPGGHEVAEPHKTGTTENLVVVSGKLR
LRVGEKVVELEPKDSVFFKADVSHEYSNPTDQETLMYLVMDYTDEIG

Sequences:

>Translated_207_residues
MVSKVEQSSDGLDPLISESGDYITDVVKENLKLIRHTKGFSLDKLANRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNV
PFSELLKEKNQDGIHILKAENSKVLYSNSKVFASRALFPFLGNRKTEFYELILKPGGHEVAEPHKTGTTENLVVVSGKLR
LRVGEKVVELEPKDSVFFKADVSHEYSNPTDQETLMYLVMDYTDEIG
>Mature_207_residues
MVSKVEQSSDGLDPLISESGDYITDVVKENLKLIRHTKGFSLDKLANRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNV
PFSELLKEKNQDGIHILKAENSKVLYSNSKVFASRALFPFLGNRKTEFYELILKPGGHEVAEPHKTGTTENLVVVSGKLR
LRVGEKVVELEPKDSVFFKADVSHEYSNPTDQETLMYLVMDYTDEIG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=173, Percent_Identity=34.1040462427746, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 23102; Mature: 23102

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSKVEQSSDGLDPLISESGDYITDVVKENLKLIRHTKGFSLDKLANRCGVSRAMLSQIE
CCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHH
QGKSVPTISVLWKIANGLNVPFSELLKEKNQDGIHILKAENSKVLYSNSKVFASRALFPF
CCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEECCCEEEEECCHHHHHHHHHHH
LGNRKTEFYELILKPGGHEVAEPHKTGTTENLVVVSGKLRLRVGEKVVELEPKDSVFFKA
HCCCCCHHHHEEECCCCCCCCCCCCCCCCCCEEEEECEEEEEECCEEEEECCCCCEEEEE
DVSHEYSNPTDQETLMYLVMDYTDEIG
ECCCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVSKVEQSSDGLDPLISESGDYITDVVKENLKLIRHTKGFSLDKLANRCGVSRAMLSQIE
CCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHH
QGKSVPTISVLWKIANGLNVPFSELLKEKNQDGIHILKAENSKVLYSNSKVFASRALFPF
CCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEECCCEEEEECCHHHHHHHHHHH
LGNRKTEFYELILKPGGHEVAEPHKTGTTENLVVVSGKLRLRVGEKVVELEPKDSVFFKA
HCCCCCHHHHEEECCCCCCCCCCCCCCCCCCEEEEECEEEEEECCEEEEECCCCCEEEEE
DVSHEYSNPTDQETLMYLVMDYTDEIG
ECCCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]