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The map label for this gene is 183220473

Identifier: 183220473

GI number: 183220473

Start: 1112235

End: 1113188

Strand: Reverse

Name: 183220473

Synonym: LEPBI_I1070

Alternate gene names: NA

Gene position: 1113188-1112235 (Counterclockwise)

Preceding gene: 183220474

Following gene: 183220472

Centisome position: 30.92

GC content: 36.06

Gene sequence:

>954_bases
TTGAATGATTTAGAATCTTTTTTGGAATGGAAACCATATCTATTCTCCATTGCCTACCGCATTACAGGGAGTTATGTGGA
TGCAGAGGATATTTTACAAGAGAGTTATCTAAGATGGCTCTCGGTCAATAAAAACATAGTAGAAAATCCCAAATCTTACT
TGGGAAGTATTGTCGCAAGACTTGCCTTTGATTTGCTAAAAAAAGCATCTAGAAAAAAAGAAACGTATATCGGTCCCTAT
TTGCCAGAACCGATTCCCGAAAAATGGGATGGGCTTGATGAGGTTGATGAAGAGAAAATGAATTTTGTTTTCCTCGTTCT
TTTAGAAACATTAAATCCATTTGAACGTGCTGTTTTGCTATTACGAGAGTCCTTTGATTTTGATTTTGAAACCATTGGAA
AAATCATAGGAAAAACTCCGGAATACTCGAGAAAAATTCTGAGTCGAGCCAAACAGGCATTAAAGCAACGTAAGAAAAAA
TTTGATCCTGATCCAAAATTTCACGCAAAGTTACTTATGGAGTTTAGCCTTGCTTGTGCGAAACAAGACACAAACTCGCT
TTCAAAATTACTCAAAGAAGATGTGATTGCATATTCTGACGGAGGTGGCAAAGTACATGCCGCAAGAATTCCAATCCCTG
GCCTCAGTCGAGTGATCACCTTCCTCAAACAAACTACTAAAAAAGCAATGAATACTTCTACTGTCTATTTTGGATATGCG
AATGGTGACCCTATGATCATCGGATATGACAAAGATGGAGTGCCAAAGTTTGTTCAATTGATTTCTGTTGAAGGAAATTT
GATCAGCAATATTTACACAGTTGCCAATCCAGAAAAACTCAAAGGATTTCAAAACATGGATCAATTGAAAAAATTAGGAT
ACATCCGAAAACCGAATCTAATTTCTTTCCTTATTTTGGACTTTCAGAATAAAATCAAAGCTTTTCTAAACTAG

Upstream 100 bases:

>100_bases
AGAGAGTCCCTTTTCGATTTTATTTTTGGCCGAAAGGAAATCTTTTTGAATCCAAGGATTTTGGACTTGGGAATCGCAAA
GAAACAAGGAGAGTCGTAAA

Downstream 100 bases:

>100_bases
AGTGCAATGCTAGGATGTTCTTTGTCGTCAAATCTTGCAAAGCTTGTGAAACAAATCATCCTCAATATTTTGTTTTCGTT
TCTGATCTTCAGTTTCTTTG

Product: putative RNA polymerase sigma-70-like factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigJ; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF-Sigma Factor; RNA Polymerase Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; Sigma Factor Sigma; RNA Polymerase; ECF-Family Protein RNA Polymerase Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigJ; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; RNA Polymerase Sigma-70 Factor Protein; Sigma-70 Factor; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; ECF Sigma Factor; RNA Polymerase Sigma-70-Like Factor; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MNDLESFLEWKPYLFSIAYRITGSYVDAEDILQESYLRWLSVNKNIVENPKSYLGSIVARLAFDLLKKASRKKETYIGPY
LPEPIPEKWDGLDEVDEEKMNFVFLVLLETLNPFERAVLLLRESFDFDFETIGKIIGKTPEYSRKILSRAKQALKQRKKK
FDPDPKFHAKLLMEFSLACAKQDTNSLSKLLKEDVIAYSDGGGKVHAARIPIPGLSRVITFLKQTTKKAMNTSTVYFGYA
NGDPMIIGYDKDGVPKFVQLISVEGNLISNIYTVANPEKLKGFQNMDQLKKLGYIRKPNLISFLILDFQNKIKAFLN

Sequences:

>Translated_317_residues
MNDLESFLEWKPYLFSIAYRITGSYVDAEDILQESYLRWLSVNKNIVENPKSYLGSIVARLAFDLLKKASRKKETYIGPY
LPEPIPEKWDGLDEVDEEKMNFVFLVLLETLNPFERAVLLLRESFDFDFETIGKIIGKTPEYSRKILSRAKQALKQRKKK
FDPDPKFHAKLLMEFSLACAKQDTNSLSKLLKEDVIAYSDGGGKVHAARIPIPGLSRVITFLKQTTKKAMNTSTVYFGYA
NGDPMIIGYDKDGVPKFVQLISVEGNLISNIYTVANPEKLKGFQNMDQLKKLGYIRKPNLISFLILDFQNKIKAFLN
>Mature_317_residues
MNDLESFLEWKPYLFSIAYRITGSYVDAEDILQESYLRWLSVNKNIVENPKSYLGSIVARLAFDLLKKASRKKETYIGPY
LPEPIPEKWDGLDEVDEEKMNFVFLVLLETLNPFERAVLLLRESFDFDFETIGKIIGKTPEYSRKILSRAKQALKQRKKK
FDPDPKFHAKLLMEFSLACAKQDTNSLSKLLKEDVIAYSDGGGKVHAARIPIPGLSRVITFLKQTTKKAMNTSTVYFGYA
NGDPMIIGYDKDGVPKFVQLISVEGNLISNIYTVANPEKLKGFQNMDQLKKLGYIRKPNLISFLILDFQNKIKAFLN

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36291; Mature: 36291

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLESFLEWKPYLFSIAYRITGSYVDAEDILQESYLRWLSVNKNIVENPKSYLGSIVAR
CCHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHH
LAFDLLKKASRKKETYIGPYLPEPIPEKWDGLDEVDEEKMNFVFLVLLETLNPFERAVLL
HHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
LRESFDFDFETIGKIIGKTPEYSRKILSRAKQALKQRKKKFDPDPKFHAKLLMEFSLACA
HHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
KQDTNSLSKLLKEDVIAYSDGGGKVHAARIPIPGLSRVITFLKQTTKKAMNTSTVYFGYA
HCCHHHHHHHHHHHHEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE
NGDPMIIGYDKDGVPKFVQLISVEGNLISNIYTVANPEKLKGFQNMDQLKKLGYIRKPNL
CCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHCCHHHHHHCCCCCCCCH
ISFLILDFQNKIKAFLN
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNDLESFLEWKPYLFSIAYRITGSYVDAEDILQESYLRWLSVNKNIVENPKSYLGSIVAR
CCHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHH
LAFDLLKKASRKKETYIGPYLPEPIPEKWDGLDEVDEEKMNFVFLVLLETLNPFERAVLL
HHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
LRESFDFDFETIGKIIGKTPEYSRKILSRAKQALKQRKKKFDPDPKFHAKLLMEFSLACA
HHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
KQDTNSLSKLLKEDVIAYSDGGGKVHAARIPIPGLSRVITFLKQTTKKAMNTSTVYFGYA
HCCHHHHHHHHHHHHEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE
NGDPMIIGYDKDGVPKFVQLISVEGNLISNIYTVANPEKLKGFQNMDQLKKLGYIRKPNL
CCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHCCHHHHHHCCCCCCCCH
ISFLILDFQNKIKAFLN
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA