Click here to switch to the map view.

The map label for this gene is jag [H]

Identifier: 18311638

GI number: 18311638

Start: 3028641

End: 3029264

Strand: Reverse

Name: jag [H]

Synonym: CPE2656

Alternate gene names: 18311638

Gene position: 3029264-3028641 (Counterclockwise)

Preceding gene: 18311639

Following gene: 18311637

Centisome position: 99.93

GC content: 31.09

Gene sequence:

>624_bases
ATGAATACAATTGAGATTACTGGAAAGACTGTTGAAGAAGCTTTAAAAAGCGCATTGGAACAGTTGAACACTACAGAAGA
TAAAGTAGAGGTTACTGTTATAGAAGAAGGAAGTAAAGGCTTCTTTAATCTAATTGGTGCAAAGCCTGCTAAAATTTCAG
TTAAGATGAAAAGAGATAGAATCTTAGAGGCTAAAAAGTTTTTAAGGGATATTCTTGATAACATGAATATAGAAGCTGAA
ATTAATATTGAAGAAAGTAAAGACCTAGTAAATATAAATCTTACTGGACCTAAGATGGGAGCCATCATAGGATACAGGGG
GGAAACTTTAGACTCACTTCAATATTTAACTAGTTTAGTTGTTAATAAGGCTAAGGAAGACAAGTACAAAAGAGTGGTTT
TAGACACTGAGAATTATAGACAGAAAAGAGAAGAAACTCTTAAAAGATTAGCTAATAAAATAGCTTATAAGGTGAGAAAG
TCAGGTAAGATATTAAAACTTGAACCTATGAATCCTTATGAAAGAAGAGTTATTCATTCAGAGTTACAGAATAATGATTT
TGTTAGAACTTTTAGTGAAGGTGAAGAACCTTACAGAAGAGTTGTAGTAGAATTAAAGAAATAA

Upstream 100 bases:

>100_bases
TTGTTTTACCTAGCAAAAAGAGAGCTAAGGAAAAAGAACAATATAAAGATATTAAGTAATAATAATTTATTTTGCTTTTC
TAAGGTGGTGAAACAAGGGT

Downstream 100 bases:

>100_bases
AAAGGAAAGCTTAAAGCTTTCCTTTTTTTATCCACAATAAACTGTAGATAAATTGTGGATAACTTGTTAGTAACTATAGA
AAAGTAGTCATACCAAAGGC

Product: SpoIIIJ-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MNTIEITGKTVEEALKSALEQLNTTEDKVEVTVIEEGSKGFFNLIGAKPAKISVKMKRDRILEAKKFLRDILDNMNIEAE
INIEESKDLVNINLTGPKMGAIIGYRGETLDSLQYLTSLVVNKAKEDKYKRVVLDTENYRQKREETLKRLANKIAYKVRK
SGKILKLEPMNPYERRVIHSELQNNDFVRTFSEGEEPYRRVVVELKK

Sequences:

>Translated_207_residues
MNTIEITGKTVEEALKSALEQLNTTEDKVEVTVIEEGSKGFFNLIGAKPAKISVKMKRDRILEAKKFLRDILDNMNIEAE
INIEESKDLVNINLTGPKMGAIIGYRGETLDSLQYLTSLVVNKAKEDKYKRVVLDTENYRQKREETLKRLANKIAYKVRK
SGKILKLEPMNPYERRVIHSELQNNDFVRTFSEGEEPYRRVVVELKK
>Mature_207_residues
MNTIEITGKTVEEALKSALEQLNTTEDKVEVTVIEEGSKGFFNLIGAKPAKISVKMKRDRILEAKKFLRDILDNMNIEAE
INIEESKDLVNINLTGPKMGAIIGYRGETLDSLQYLTSLVVNKAKEDKYKRVVLDTENYRQKREETLKRLANKIAYKVRK
SGKILKLEPMNPYERRVIHSELQNNDFVRTFSEGEEPYRRVVVELKK

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 23878; Mature: 23878

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTIEITGKTVEEALKSALEQLNTTEDKVEVTVIEEGSKGFFNLIGAKPAKISVKMKRDR
CCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHCCCCCEEEEEEHHHH
ILEAKKFLRDILDNMNIEAEINIEESKDLVNINLTGPKMGAIIGYRGETLDSLQYLTSLV
HHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCCCEEEECCCCHHHHHHHHHHHH
VNKAKEDKYKRVVLDTENYRQKREETLKRLANKIAYKVRKSGKILKLEPMNPYERRVIHS
HHHHHCCHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
ELQNNDFVRTFSEGEEPYRRVVVELKK
HHCCCCEEEEHHCCCHHHHHHHHHCCC
>Mature Secondary Structure
MNTIEITGKTVEEALKSALEQLNTTEDKVEVTVIEEGSKGFFNLIGAKPAKISVKMKRDR
CCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHCCCCCEEEEEEHHHH
ILEAKKFLRDILDNMNIEAEINIEESKDLVNINLTGPKMGAIIGYRGETLDSLQYLTSLV
HHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCCCEEEECCCCHHHHHHHHHHHH
VNKAKEDKYKRVVLDTENYRQKREETLKRLANKIAYKVRKSGKILKLEPMNPYERRVIHS
HHHHHCCHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
ELQNNDFVRTFSEGEEPYRRVVVELKK
HHCCCCEEEEHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]