Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

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The map label for this gene is 18311600

Identifier: 18311600

GI number: 18311600

Start: 2995072

End: 2995614

Strand: Reverse

Name: 18311600

Synonym: CPE2618

Alternate gene names: NA

Gene position: 2995614-2995072 (Counterclockwise)

Preceding gene: 18311601

Following gene: 18311599

Centisome position: 98.82

GC content: 37.2

Gene sequence:

>543_bases
ATGAAAAAATTTGTTTGTACAGTATGTGGATATGTTTATGAAGGAGAAAAAGCACCAGAAAAATGCCCAGTATGTGGAGT
TGGAGCTGACAAATTCGTAGAACAAGGAGAAGACTTAGCATTTGCAGATGAGCACAGAATCGGAGTTGCTAAAGGCGTAG
ATGAAAGAATAATCGAAGGATTACAAGCTAACTTTGTTGGAGAATGTACAGAAGTAGGAATGTACTTAGCTATGTCAAGA
CAAGCTGATAGAGAAGGATTCCCAGAAGTTGCTGAAGCTTATAAAAGAATAGCTTTCGAAGAAGCAGAACACGCTGCTAA
ATTCGCAGAAATGTTAGGAGAAGTTGTAGAAGCTGATACAAAAGCTAACTTACAAGCAAGAGTAAATGCAGAGCATGGAG
CTTGCCAAGGTAAAAAAGATTTAGCTACTTTAGCTAAACAATTAAACTTAGATGCAATCCACGACACAGTTCACGAAATG
TGTAAAGATGAAGCTAGACACGGAAAAGCTTTCGCTGGATTATTAAACAGATACTTTAAATAA

Upstream 100 bases:

>100_bases
GAGGAAATACATCAACAAAGAAACACTTAAATAAAGACTTTTAAATTATGATATAAATTGAAATTAGATAAATTGTTTGT
TTTGTAGGAGGAATAAAATT

Downstream 100 bases:

>100_bases
GAATCCATCACAAATTGTTTGTATTGATATATTTATAAAGAAAACACCACTAAAACACCTAGTTTAGTGGTGTTTTTTTA
GTTTGAAAGGTATTTTTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MKKFVCTVCGYVYEGEKAPEKCPVCGVGADKFVEQGEDLAFADEHRIGVAKGVDERIIEGLQANFVGECTEVGMYLAMSR
QADREGFPEVAEAYKRIAFEEAEHAAKFAEMLGEVVEADTKANLQARVNAEHGACQGKKDLATLAKQLNLDAIHDTVHEM
CKDEARHGKAFAGLLNRYFK

Sequences:

>Translated_180_residues
MKKFVCTVCGYVYEGEKAPEKCPVCGVGADKFVEQGEDLAFADEHRIGVAKGVDERIIEGLQANFVGECTEVGMYLAMSR
QADREGFPEVAEAYKRIAFEEAEHAAKFAEMLGEVVEADTKANLQARVNAEHGACQGKKDLATLAKQLNLDAIHDTVHEM
CKDEARHGKAFAGLLNRYFK
>Mature_180_residues
MKKFVCTVCGYVYEGEKAPEKCPVCGVGADKFVEQGEDLAFADEHRIGVAKGVDERIIEGLQANFVGECTEVGMYLAMSR
QADREGFPEVAEAYKRIAFEEAEHAAKFAEMLGEVVEADTKANLQARVNAEHGACQGKKDLATLAKQLNLDAIHDTVHEM
CKDEARHGKAFAGLLNRYFK

Specific function: Unknown

COG id: COG1592

COG function: function code C; Rubrerythrin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ferritin-like diiron domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009040
- InterPro:   IPR012347
- InterPro:   IPR009078
- InterPro:   IPR003251 [H]

Pfam domain/function: PF02915 Rubrerythrin [H]

EC number: NA

Molecular weight: Translated: 19805; Mature: 19805

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS50903 RUBREDOXIN_LIKE ; PS50905 FERRITIN_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFVCTVCGYVYEGEKAPEKCPVCGVGADKFVEQGEDLAFADEHRIGVAKGVDERIIEG
CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHCHHHHCCHHHHHHHH
LQANFVGECTEVGMYLAMSRQADREGFPEVAEAYKRIAFEEAEHAAKFAEMLGEVVEADT
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KANLQARVNAEHGACQGKKDLATLAKQLNLDAIHDTVHEMCKDEARHGKAFAGLLNRYFK
CCCHHEEECCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure
MKKFVCTVCGYVYEGEKAPEKCPVCGVGADKFVEQGEDLAFADEHRIGVAKGVDERIIEG
CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHCHHHHCCHHHHHHHH
LQANFVGECTEVGMYLAMSRQADREGFPEVAEAYKRIAFEEAEHAAKFAEMLGEVVEADT
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KANLQARVNAEHGACQGKKDLATLAKQLNLDAIHDTVHEMCKDEARHGKAFAGLLNRYFK
CCCHHEEECCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]