Click here to switch to the map view.

The map label for this gene is ydhY [C]

Identifier: 18311557

GI number: 18311557

Start: 2950548

End: 2952020

Strand: Reverse

Name: ydhY [C]

Synonym: CPE2575

Alternate gene names: 18311557

Gene position: 2952020-2950548 (Counterclockwise)

Preceding gene: 18311558

Following gene: 18311555

Centisome position: 97.38

GC content: 31.64

Gene sequence:

>1473_bases
ATGGCTATAAAGGATGCTAACAAGCAATATATAAAGTTTGACACTGCTGTTCAAGTTCTTAAATATGAGGTTTTAAAAAG
GATAGCAGAGAAAGAATTTGATGGCACTTTAGACAAAGAAAAGCTTAATATAGCAAAAGAAATTGTAGATGATTTAAAAC
CTAATGTAAGATGTTGCATATATAAGGAAAGGGCTATAGTTGAAGAAAGAATGAAACTAGCTTTAGGTGGACATGAAAAT
AGAGAAAACATGATAGAGGTAATAGACATAGCCTGTGATGAATGTCCTGTTAATAGATTTATAGTCACTGATGCATGTAG
AGGATGCCTAGCTAAGAAATGTAGAGATAGTTGTAATTTTGGAGCTATAAGTTTTGATAATAGAAAATGCAAAATTGATT
ATGAAAAGTGTAAAGAATGTGGAAAATGCAAAGAAGTTTGTCCTTATAATGCAATAGCTGAGGTTAAAAGACCTTGTATG
AGAGCCTGTATTCCAAAAGCATTATCTTATGATGTTGATAGTAAAAAAGCTGTCATAGATGATTCAAAATGTATTCAATG
TGGAGCCTGTGTAGTTGATTGTCCTTTTGGAGCTATAATGGACAAATCTTATTTAGTAGATGTTATAAGATTACTTAAAG
ATGAGAAGAAAGTTTATGCTATTGTGGCGCCAGCTATATCATCTCAATTTAATCATAGTAAGATTGGTAAAGTAATTACT
GCTATAAAAAAATTAGGATTTGAAGATGTGTTTGAAGCAGCTTTAGGAGCAGATTTGGTGGCTGTTCATGAATGTAATGA
ATTTAAAGAAAAAGGTGAATTAGACTTCATGACAACAAGTTGTTGCCCTGCCTTTGTTTCTTATATAGAAAAAAATTATC
CAGAGCTTAAGGAGTGTATATCTAACACTGTATCTCCTATGGTAGCTATGGCAAGGTTAATAAAATCTCAAAATAAAGAT
GTTAAAACTGTATTCATAGGACCTTGTATTGCAAAGAAAACAGAAGCTAAGAGAAATGAGGTTAGTGGAGATGTTGATTA
CGTATTAACCTTTGAGGAGCTTTTAGCTTTACTTGACTCTAGGAATATTAAAATCGACGAATGTGAAGAAAGTGATACTA
AGCATGGTTCATTTTATGGAAGACTTTTTGCTAGAAGTGGAGGAGTTACTGAATCAGTTAAACATCTTATAGATAGCGAA
GGGATAAAAGTAGATTTTAGACCTATACTTGGAGATGGAATTAAGGATTGTGATATAAAACTTAGATTAGCAAAACTAAA
AAGAGCACAGGGAAACTTTTTAGAAGGAATGGCTTGTAAAGGTGGATGTATAAATGGGCCAGGATCCTTAAATCATGATA
TTAAGAATAGCAAAGAAGTTGATAAATATGGTGAATTATCCTCTTCTGAGAAGATAAAAGATACTTTAGCTGATATTAAA
TTTGAGGATTTAAATTTATCTAAAAATGAGTAA

Upstream 100 bases:

>100_bases
AAGGATAATAAATTTGTCTCTAAAAAATAATAAATAGTATTTTCTTTAAATCTTAATATAATATCTGCGCTACAATAGTT
ATTTTGTGGGGGAGTTTTTT

Downstream 100 bases:

>100_bases
TATAAAAAAATTCTAATTTAAAATATAAAAGCTTAAAAATAGAGTAGGAAAGTTTAGTTATATAAAATTAGTATCATACT
AAAAATAAAATTAAGCCTTT

Product: [Fe] hydrogenase

Products: NA

Alternate protein names: CpI; Fe-only hydrogenase; [Fe] hydrogenase [H]

Number of amino acids: Translated: 490; Mature: 489

Protein sequence:

>490_residues
MAIKDANKQYIKFDTAVQVLKYEVLKRIAEKEFDGTLDKEKLNIAKEIVDDLKPNVRCCIYKERAIVEERMKLALGGHEN
RENMIEVIDIACDECPVNRFIVTDACRGCLAKKCRDSCNFGAISFDNRKCKIDYEKCKECGKCKEVCPYNAIAEVKRPCM
RACIPKALSYDVDSKKAVIDDSKCIQCGACVVDCPFGAIMDKSYLVDVIRLLKDEKKVYAIVAPAISSQFNHSKIGKVIT
AIKKLGFEDVFEAALGADLVAVHECNEFKEKGELDFMTTSCCPAFVSYIEKNYPELKECISNTVSPMVAMARLIKSQNKD
VKTVFIGPCIAKKTEAKRNEVSGDVDYVLTFEELLALLDSRNIKIDECEESDTKHGSFYGRLFARSGGVTESVKHLIDSE
GIKVDFRPILGDGIKDCDIKLRLAKLKRAQGNFLEGMACKGGCINGPGSLNHDIKNSKEVDKYGELSSSEKIKDTLADIK
FEDLNLSKNE

Sequences:

>Translated_490_residues
MAIKDANKQYIKFDTAVQVLKYEVLKRIAEKEFDGTLDKEKLNIAKEIVDDLKPNVRCCIYKERAIVEERMKLALGGHEN
RENMIEVIDIACDECPVNRFIVTDACRGCLAKKCRDSCNFGAISFDNRKCKIDYEKCKECGKCKEVCPYNAIAEVKRPCM
RACIPKALSYDVDSKKAVIDDSKCIQCGACVVDCPFGAIMDKSYLVDVIRLLKDEKKVYAIVAPAISSQFNHSKIGKVIT
AIKKLGFEDVFEAALGADLVAVHECNEFKEKGELDFMTTSCCPAFVSYIEKNYPELKECISNTVSPMVAMARLIKSQNKD
VKTVFIGPCIAKKTEAKRNEVSGDVDYVLTFEELLALLDSRNIKIDECEESDTKHGSFYGRLFARSGGVTESVKHLIDSE
GIKVDFRPILGDGIKDCDIKLRLAKLKRAQGNFLEGMACKGGCINGPGSLNHDIKNSKEVDKYGELSSSEKIKDTLADIK
FEDLNLSKNE
>Mature_489_residues
AIKDANKQYIKFDTAVQVLKYEVLKRIAEKEFDGTLDKEKLNIAKEIVDDLKPNVRCCIYKERAIVEERMKLALGGHENR
ENMIEVIDIACDECPVNRFIVTDACRGCLAKKCRDSCNFGAISFDNRKCKIDYEKCKECGKCKEVCPYNAIAEVKRPCMR
ACIPKALSYDVDSKKAVIDDSKCIQCGACVVDCPFGAIMDKSYLVDVIRLLKDEKKVYAIVAPAISSQFNHSKIGKVITA
IKKLGFEDVFEAALGADLVAVHECNEFKEKGELDFMTTSCCPAFVSYIEKNYPELKECISNTVSPMVAMARLIKSQNKDV
KTVFIGPCIAKKTEAKRNEVSGDVDYVLTFEELLALLDSRNIKIDECEESDTKHGSFYGRLFARSGGVTESVKHLIDSEG
IKVDFRPILGDGIKDCDIKLRLAKLKRAQGNFLEGMACKGGCINGPGSLNHDIKNSKEVDKYGELSSSEKIKDTLADIKF
EDLNLSKNE

Specific function: Unknown

COG id: COG4624

COG function: function code R; Iron only hydrogenase large subunit, C-terminal domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR009016
- InterPro:   IPR004108
- InterPro:   IPR003149
- InterPro:   IPR013352
- InterPro:   IPR001041 [H]

Pfam domain/function: PF02906 Fe_hyd_lg_C; PF02256 Fe_hyd_SSU [H]

EC number: =1.12.7.2 [H]

Molecular weight: Translated: 54687; Mature: 54556

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
5.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIKDANKQYIKFDTAVQVLKYEVLKRIAEKEFDGTLDKEKLNIAKEIVDDLKPNVRCCI
CCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEE
YKERAIVEERMKLALGGHENRENMIEVIDIACDECPVNRFIVTDACRGCLAKKCRDSCNF
EHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
GAISFDNRKCKIDYEKCKECGKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVID
CCEEECCCEEEECHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEC
DSKCIQCGACVVDCPFGAIMDKSYLVDVIRLLKDEKKVYAIVAPAISSQFNHSKIGKVIT
CCCHHHHCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCHHHHHHHHH
AIKKLGFEDVFEAALGADLVAVHECNEFKEKGELDFMTTSCCPAFVSYIEKNYPELKECI
HHHHCCHHHHHHHHHCCCCEEHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCHHHHHHH
SNTVSPMVAMARLIKSQNKDVKTVFIGPCIAKKTEAKRNEVSGDVDYVLTFEELLALLDS
HHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCHHHEEEHHHHHHHHHC
RNIKIDECEESDTKHGSFYGRLFARSGGVTESVKHLIDSEGIKVDFRPILGDGIKDCDIK
CCCEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEHHHCCCCCCCCHH
LRLAKLKRAQGNFLEGMACKGGCINGPGSLNHDIKNSKEVDKYGELSSSEKIKDTLADIK
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCE
FEDLNLSKNE
EECCCCCCCC
>Mature Secondary Structure 
AIKDANKQYIKFDTAVQVLKYEVLKRIAEKEFDGTLDKEKLNIAKEIVDDLKPNVRCCI
CCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEE
YKERAIVEERMKLALGGHENRENMIEVIDIACDECPVNRFIVTDACRGCLAKKCRDSCNF
EHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
GAISFDNRKCKIDYEKCKECGKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVID
CCEEECCCEEEECHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEC
DSKCIQCGACVVDCPFGAIMDKSYLVDVIRLLKDEKKVYAIVAPAISSQFNHSKIGKVIT
CCCHHHHCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCHHHHHHHHH
AIKKLGFEDVFEAALGADLVAVHECNEFKEKGELDFMTTSCCPAFVSYIEKNYPELKECI
HHHHCCHHHHHHHHHCCCCEEHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCHHHHHHH
SNTVSPMVAMARLIKSQNKDVKTVFIGPCIAKKTEAKRNEVSGDVDYVLTFEELLALLDS
HHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCHHHEEEHHHHHHHHHC
RNIKIDECEESDTKHGSFYGRLFARSGGVTESVKHLIDSEGIKVDFRPILGDGIKDCDIK
CCCEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEHHHCCCCCCCCHH
LRLAKLKRAQGNFLEGMACKGGCINGPGSLNHDIKNSKEVDKYGELSSSEKIKDTLADIK
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCE
FEDLNLSKNE
EECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1911757; 9836629; 10529166 [H]