Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18311529

Identifier: 18311529

GI number: 18311529

Start: 2917577

End: 2917891

Strand: Reverse

Name: 18311529

Synonym: CPE2547

Alternate gene names: NA

Gene position: 2917891-2917577 (Counterclockwise)

Preceding gene: 18311531

Following gene: 18311528

Centisome position: 96.25

GC content: 30.79

Gene sequence:

>315_bases
ATGATAAAAGCTATAGTTATTCCTACACCTAAAAGATTAAAGAACTACATAAGAGATACTGATTTTAAAAAGAAGGCGAA
ATCTTTTGTTACTCCAGAGAGAGCTATTATATATGGAACCATAGGAACAGGTGTAACCATAATGTCTTTAAGTGATGTGC
CAGCTAAACCCTTTGTTATAGGAAGTTTATTATATCATGGCATTGCCTATGAAATTTTAGAAAAGTGGTATGATGAGTAT
GGTAATGACGAAGAGCTTAGAGAAATGATGATGCAAAATAGAGATTATTGGAATAATTTTTATATGAGGTTTTAA

Upstream 100 bases:

>100_bases
GGTTTAAAATGCATTTAAGAAAAATAAATTGGTACTTTAGAATAATAAGATAATATTTAATATATATTTCTAATAAGAGT
AATTTTAAGGATTGAAAAAA

Downstream 100 bases:

>100_bases
ACTATAAAAAATTTATGGGTAAAAATCAGTACGCATCTAAAATAGATACTTAATTTAAAATATAACTAGAATTTATTAGA
GAAAATATATATAATAATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MIKAIVIPTPKRLKNYIRDTDFKKKAKSFVTPERAIIYGTIGTGVTIMSLSDVPAKPFVIGSLLYHGIAYEILEKWYDEY
GNDEELREMMMQNRDYWNNFYMRF

Sequences:

>Translated_104_residues
MIKAIVIPTPKRLKNYIRDTDFKKKAKSFVTPERAIIYGTIGTGVTIMSLSDVPAKPFVIGSLLYHGIAYEILEKWYDEY
GNDEELREMMMQNRDYWNNFYMRF
>Mature_104_residues
MIKAIVIPTPKRLKNYIRDTDFKKKAKSFVTPERAIIYGTIGTGVTIMSLSDVPAKPFVIGSLLYHGIAYEILEKWYDEY
GNDEELREMMMQNRDYWNNFYMRF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12297; Mature: 12297

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKAIVIPTPKRLKNYIRDTDFKKKAKSFVTPERAIIYGTIGTGVTIMSLSDVPAKPFVI
CCEEEECCCHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCHHHH
GSLLYHGIAYEILEKWYDEYGNDEELREMMMQNRDYWNNFYMRF
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHCEECC
>Mature Secondary Structure
MIKAIVIPTPKRLKNYIRDTDFKKKAKSFVTPERAIIYGTIGTGVTIMSLSDVPAKPFVI
CCEEEECCCHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCHHHH
GSLLYHGIAYEILEKWYDEYGNDEELREMMMQNRDYWNNFYMRF
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA