| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is thiT [H]
Identifier: 18311527
GI number: 18311527
Start: 2915882
End: 2916487
Strand: Reverse
Name: thiT [H]
Synonym: CPE2545
Alternate gene names: 18311527
Gene position: 2916487-2915882 (Counterclockwise)
Preceding gene: 18311528
Following gene: 18311526
Centisome position: 96.21
GC content: 28.22
Gene sequence:
>606_bases ATGAGTGTTTATTTAGTAGCTTTAATTGGAATTTTAATATTAGGTTTATACATATTAGATTTAAGAAAACATAAAATTAC AACAAGAGAAATTATCATGATTGGACTAAGTGTAGCTATTTCTTATGTGCTTTATATGATACCTTTAGTTAGATATCCTC AAGGTTGTGGAATAACTTTTTTTTCTATGCTTCCAATAATGCTTTTATCATTAGTATATGGAAGAACTGTTGGAGTTACA GGAGGCTTAATATTTGGGCTTTTAAAAATATTAAATGGAGCTTTTATAGTACACCCAGTACAATTTTTACTTGATTATAT ACTATCAAATATGGCTTTAGGACTAGCAGGATCATTTGGAATAGACAAGAAATATAAAATATTCCTTGGCTCACTTATGG CTGGTAGTATAAGTACTTTTGTAAGCATAATATCAGGAGTGATTTTCTTTGGTCAATATGCTCCTCCAGGAATGAATTTA TGGATTTATTCAATAATTTATAATACAAGCAGTGCAGGAGTTGAAAGTTTATTAACAGCTATAGTAATAACAATAATGCC AATAAAAATGTTAGCTAAAAGAATGAAGCCTACAAATAATATATAG
Upstream 100 bases:
>100_bases TATCTGAAGAAAAACAAAAAAGATTAATAGATATATTTAAAAGAGCTAGTTTGTACGAACTTGATTTTTGGAATATGGCG TATGATGAAGGTGAAAAATA
Downstream 100 bases:
>100_bases AAAATTTTAATAGGGAGTTGCATCATAATTAAATTAGATTATTTGATGCAGCTCTTATTTTAGTTTTGGAAGAAACTTGA GTTTATATTATAATGAAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 201; Mature: 200
Protein sequence:
>201_residues MSVYLVALIGILILGLYILDLRKHKITTREIIMIGLSVAISYVLYMIPLVRYPQGCGITFFSMLPIMLLSLVYGRTVGVT GGLIFGLLKILNGAFIVHPVQFLLDYILSNMALGLAGSFGIDKKYKIFLGSLMAGSISTFVSIISGVIFFGQYAPPGMNL WIYSIIYNTSSAGVESLLTAIVITIMPIKMLAKRMKPTNNI
Sequences:
>Translated_201_residues MSVYLVALIGILILGLYILDLRKHKITTREIIMIGLSVAISYVLYMIPLVRYPQGCGITFFSMLPIMLLSLVYGRTVGVT GGLIFGLLKILNGAFIVHPVQFLLDYILSNMALGLAGSFGIDKKYKIFLGSLMAGSISTFVSIISGVIFFGQYAPPGMNL WIYSIIYNTSSAGVESLLTAIVITIMPIKMLAKRMKPTNNI >Mature_200_residues SVYLVALIGILILGLYILDLRKHKITTREIIMIGLSVAISYVLYMIPLVRYPQGCGITFFSMLPIMLLSLVYGRTVGVTG GLIFGLLKILNGAFIVHPVQFLLDYILSNMALGLAGSFGIDKKYKIFLGSLMAGSISTFVSIISGVIFFGQYAPPGMNLW IYSIIYNTSSAGVESLLTAIVITIMPIKMLAKRMKPTNNI
Specific function: Probable proton-coupled thiamine transporter [H]
COG id: COG3859
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the proton-coupled thiamine transporter family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012651 [H]
Pfam domain/function: PF09515 Thia_YuaJ [H]
EC number: NA
Molecular weight: Translated: 21996; Mature: 21865
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 5.5 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVYLVALIGILILGLYILDLRKHKITTREIIMIGLSVAISYVLYMIPLVRYPQGCGITF CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH FSMLPIMLLSLVYGRTVGVTGGLIFGLLKILNGAFIVHPVQFLLDYILSNMALGLAGSFG HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC IDKKYKIFLGSLMAGSISTFVSIISGVIFFGQYAPPGMNLWIYSIIYNTSSAGVESLLTA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHCCCHHHHHHHHHH IVITIMPIKMLAKRMKPTNNI HHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SVYLVALIGILILGLYILDLRKHKITTREIIMIGLSVAISYVLYMIPLVRYPQGCGITF HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH FSMLPIMLLSLVYGRTVGVTGGLIFGLLKILNGAFIVHPVQFLLDYILSNMALGLAGSFG HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC IDKKYKIFLGSLMAGSISTFVSIISGVIFFGQYAPPGMNLWIYSIIYNTSSAGVESLLTA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHCCCHHHHHHHHHH IVITIMPIKMLAKRMKPTNNI HHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]