| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311503
Identifier: 18311503
GI number: 18311503
Start: 2885391
End: 2886890
Strand: Reverse
Name: 18311503
Synonym: CPE2521
Alternate gene names: NA
Gene position: 2886890-2885391 (Counterclockwise)
Preceding gene: 18311505
Following gene: 18311502
Centisome position: 95.23
GC content: 24.73
Gene sequence:
>1500_bases ATGAAAATTTATATTATAGGAGCCTTAATTGGAGCAGTAATAGGCTACATAACAAACTGGCTTGCTATAAAAATGTTATT TAGGCCAAGAGAAGCAAAGTATATTTTTGGCATGAAACTTCCTTTTACACCAGGATTAATACCTAAGGAAAAAAGTAGAA TAGCTAATAAGGTTGGAGAAACTGTAGGAACTCATTTACTAAATTCAGATAGCTTAAGTAAGGCTTTAAAGGATGATAAA ATAAAATCAAAATTTAATGAAGTTGCTAAAGAAAAAATTAATCAAGTTATTAATAGCAATTCAACTTTAGAGGAATCATT AAAAAATACTTTAGGGGAAAATTACTATGCTCTAAAGGGAAATATGATAAACAATATAGCTAAGACTATTTTAGAATCAA TTCAGGAAGAGGAGTTTAAAAATAAGCTTAAATTTTATATAGTAGATTCTATTAAAGAAAGACTAAATAAAAATCCTAAA AAGATAATTGATTTTATAAATAGCAATAAATTTAGAGAAGTAATAATAAATACTTTAGAGGAAGAAAAAACAAGAGACAT AATAGGAAAAGCTCTTTTAAAAGAAGTAAAAACTTTAGAAAAAGAAGATTTAACTATTGAAGAAGTCATTCCAGAAAATA TTAAACCTTACATAGAAGAATATGTAAAATCTCAAAAAGATACTCTTGTGGATATAATAAAAAATCTTCTTAGAGATGAT GAGGTTTCATATAAGATAAAAAGTGCAATAAATGATAATATACCATCTATAGTATCAATGTTTCTAAGTGGAGATGTAAT ATACGGAAAGTTAGTTTCATTAGTTGATAAGTCTTTAAGTGAAGAAGAAAATAAAGAGTATATATGTGATGCGGCTTTAG CTTTTGTACATGAAAGTATGAAGAAAAAAGTAAGTGATGTAATAAATAATGTTGGAGAAGAAAAGCTAGAGGTAATATCA GATGCTCTAGGAGATAAGATTTCAAAAAAATTAAATACAGAAGAAAATATAGATTCTATAATAAGTAAACTAAATTGTAA AATTTCTTCTTTTAATAGTTATGAAGAAATTATAAAAGTGTTATTCAATGACTATGAAAATATTCTAATTGATAATATAG ATTCAATGATTTCTCAAATTGTTAATAATAACCAATTATCTGGTGAAATAAGTAAAATAATTGAAAAGGTATTTGATAAA TTTTTACAAAATTCCTTAAATGATATATGTTATAATAAACAAAACTTAGAAAATAGTATTATGAGTATTTTAGATAATTT ATATAATGATTTTGTGGAAAATAAATCAGCTAAAGTACTAGAAATTGTGGATATTTCTTCAATAGTAGAAGAACAGATAA ATGCTTTCGAAGTGGATTATGCAGAGGAAATCATAATTGGAATAGCTAATAAAGAACTTAAGGCAATAACTTGGTTAGGA GCTTTATTAGGAGGAATTCTAGGAATTTTATCACCACTTTTATCTACAATTTATATGTAA
Upstream 100 bases:
>100_bases TTATTCACCACCCTTAAAAAATAAGTAGTATTATATTAATATAAATATATAATATTTTACACTATTTAAGTGAATTTTAA ATTGATAGGAGTGAAAATAG
Downstream 100 bases:
>100_bases AATTCAAAGGAGAAAATTATGAAATATAAAATATTTGATACACATGCACATTATGACTCAGATAGTTTTGATGAAGATAG AGAAAATGTAATAAAAGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 499; Mature: 499
Protein sequence:
>499_residues MKIYIIGALIGAVIGYITNWLAIKMLFRPREAKYIFGMKLPFTPGLIPKEKSRIANKVGETVGTHLLNSDSLSKALKDDK IKSKFNEVAKEKINQVINSNSTLEESLKNTLGENYYALKGNMINNIAKTILESIQEEEFKNKLKFYIVDSIKERLNKNPK KIIDFINSNKFREVIINTLEEEKTRDIIGKALLKEVKTLEKEDLTIEEVIPENIKPYIEEYVKSQKDTLVDIIKNLLRDD EVSYKIKSAINDNIPSIVSMFLSGDVIYGKLVSLVDKSLSEEENKEYICDAALAFVHESMKKKVSDVINNVGEEKLEVIS DALGDKISKKLNTEENIDSIISKLNCKISSFNSYEEIIKVLFNDYENILIDNIDSMISQIVNNNQLSGEISKIIEKVFDK FLQNSLNDICYNKQNLENSIMSILDNLYNDFVENKSAKVLEIVDISSIVEEQINAFEVDYAEEIIIGIANKELKAITWLG ALLGGILGILSPLLSTIYM
Sequences:
>Translated_499_residues MKIYIIGALIGAVIGYITNWLAIKMLFRPREAKYIFGMKLPFTPGLIPKEKSRIANKVGETVGTHLLNSDSLSKALKDDK IKSKFNEVAKEKINQVINSNSTLEESLKNTLGENYYALKGNMINNIAKTILESIQEEEFKNKLKFYIVDSIKERLNKNPK KIIDFINSNKFREVIINTLEEEKTRDIIGKALLKEVKTLEKEDLTIEEVIPENIKPYIEEYVKSQKDTLVDIIKNLLRDD EVSYKIKSAINDNIPSIVSMFLSGDVIYGKLVSLVDKSLSEEENKEYICDAALAFVHESMKKKVSDVINNVGEEKLEVIS DALGDKISKKLNTEENIDSIISKLNCKISSFNSYEEIIKVLFNDYENILIDNIDSMISQIVNNNQLSGEISKIIEKVFDK FLQNSLNDICYNKQNLENSIMSILDNLYNDFVENKSAKVLEIVDISSIVEEQINAFEVDYAEEIIIGIANKELKAITWLG ALLGGILGILSPLLSTIYM >Mature_499_residues MKIYIIGALIGAVIGYITNWLAIKMLFRPREAKYIFGMKLPFTPGLIPKEKSRIANKVGETVGTHLLNSDSLSKALKDDK IKSKFNEVAKEKINQVINSNSTLEESLKNTLGENYYALKGNMINNIAKTILESIQEEEFKNKLKFYIVDSIKERLNKNPK KIIDFINSNKFREVIINTLEEEKTRDIIGKALLKEVKTLEKEDLTIEEVIPENIKPYIEEYVKSQKDTLVDIIKNLLRDD EVSYKIKSAINDNIPSIVSMFLSGDVIYGKLVSLVDKSLSEEENKEYICDAALAFVHESMKKKVSDVINNVGEEKLEVIS DALGDKISKKLNTEENIDSIISKLNCKISSFNSYEEIIKVLFNDYENILIDNIDSMISQIVNNNQLSGEISKIIEKVFDK FLQNSLNDICYNKQNLENSIMSILDNLYNDFVENKSAKVLEIVDISSIVEEQINAFEVDYAEEIIIGIANKELKAITWLG ALLGGILGILSPLLSTIYM
Specific function: Unknown
COG id: COG4399
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0754 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007383 - InterPro: IPR016991 [H]
Pfam domain/function: PF04286 DUF445 [H]
EC number: NA
Molecular weight: Translated: 56570; Mature: 56570
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIYIIGALIGAVIGYITNWLAIKMLFRPREAKYIFGMKLPFTPGLIPKEKSRIANKVGE CEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH TVGTHLLNSDSLSKALKDDKIKSKFNEVAKEKINQVINSNSTLEESLKNTLGENYYALKG HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECC NMINNIAKTILESIQEEEFKNKLKFYIVDSIKERLNKNPKKIIDFINSNKFREVIINTLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH EEKTRDIIGKALLKEVKTLEKEDLTIEEVIPENIKPYIEEYVKSQKDTLVDIIKNLLRDD HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC EVSYKIKSAINDNIPSIVSMFLSGDVIYGKLVSLVDKSLSEEENKEYICDAALAFVHESM HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH KKKVSDVINNVGEEKLEVISDALGDKISKKLNTEENIDSIISKLNCKISSFNSYEEIIKV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHCCCCHHHHHHH LFNDYENILIDNIDSMISQIVNNNQLSGEISKIIEKVFDKFLQNSLNDICYNKQNLENSI HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH MSILDNLYNDFVENKSAKVLEIVDISSIVEEQINAFEVDYAEEIIIGIANKELKAITWLG HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH ALLGGILGILSPLLSTIYM HHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKIYIIGALIGAVIGYITNWLAIKMLFRPREAKYIFGMKLPFTPGLIPKEKSRIANKVGE CEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH TVGTHLLNSDSLSKALKDDKIKSKFNEVAKEKINQVINSNSTLEESLKNTLGENYYALKG HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECC NMINNIAKTILESIQEEEFKNKLKFYIVDSIKERLNKNPKKIIDFINSNKFREVIINTLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH EEKTRDIIGKALLKEVKTLEKEDLTIEEVIPENIKPYIEEYVKSQKDTLVDIIKNLLRDD HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC EVSYKIKSAINDNIPSIVSMFLSGDVIYGKLVSLVDKSLSEEENKEYICDAALAFVHESM HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH KKKVSDVINNVGEEKLEVISDALGDKISKKLNTEENIDSIISKLNCKISSFNSYEEIIKV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHCCCCHHHHHHH LFNDYENILIDNIDSMISQIVNNNQLSGEISKIIEKVFDKFLQNSLNDICYNKQNLENSI HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH MSILDNLYNDFVENKSAKVLEIVDISSIVEEQINAFEVDYAEEIIIGIANKELKAITWLG HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH ALLGGILGILSPLLSTIYM HHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA