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The map label for this gene is yabF [H]

Identifier: 18311500

GI number: 18311500

Start: 2882651

End: 2883199

Strand: Reverse

Name: yabF [H]

Synonym: CPE2518

Alternate gene names: 18311500

Gene position: 2883199-2882651 (Counterclockwise)

Preceding gene: 18311501

Following gene: 18311499

Centisome position: 95.11

GC content: 33.15

Gene sequence:

>549_bases
TTGATTAAAGAAGTTATAGTAGTTGAAGGTAGAGACGATATAACAGCAGTTAAGAAGGCTATAGATGCTGAAATCATAGC
TGTTGGTGGATTCGGAATAAATGCAAAGGTTATAGAGAGAATAAAAGAAGCTCAAAAGAGAAAAGGAGTTATTGTATTTA
CTGATCCAGACTTTGCTGGAGAAAAGATAAGAGCAATAATATCAAAGAGAGTTAAAGGCGTTAAGCATGCTTACATAGGA
AGAGCAGAGGGAACTAGAGCTAAGGATGGAAACATAGGCGTAGAGAATGCGTCACCAGAGGCTATAATTAGAGCCTTAGA
AAATGCAAAAATAACTTTAGAAGAAAAAAGAGAAGAATTTACAATACAAGATCTAATATATTTTGGATTATCAGCAGATC
CAAAGGCTAAAGTGAGAAGAGAGTTACTTGGTAAAGAATTAAGAATCGGTTATGGAAATGCAAACCAAGTTCTTTCAAGA
TTAAATAACTATGGCATAACAAAAGAAGAATTTGTTAAAGCTATAGAAAAGATAGAAAAGATGATATAG

Upstream 100 bases:

>100_bases
GACCCTCTATTTTATTTTGTATTAAAGCATTTTATTGACAGTTAAATGAGATATAGGTAAATTAAATATAGTACATATAA
TAAGAAAGGGAGTTTTAACC

Downstream 100 bases:

>100_bases
GAGAGTAGTGAATGGATATAAACGAAATAAAAGATATAAAGACAAAGGAGCTTGTTCAGAAGTATAATTTTAGATTTTCA
AAAAGCTTAGGACAAAACTT

Product: primase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MIKEVIVVEGRDDITAVKKAIDAEIIAVGGFGINAKVIERIKEAQKRKGVIVFTDPDFAGEKIRAIISKRVKGVKHAYIG
RAEGTRAKDGNIGVENASPEAIIRALENAKITLEEKREEFTIQDLIYFGLSADPKAKVRRELLGKELRIGYGNANQVLSR
LNNYGITKEEFVKAIEKIEKMI

Sequences:

>Translated_182_residues
MIKEVIVVEGRDDITAVKKAIDAEIIAVGGFGINAKVIERIKEAQKRKGVIVFTDPDFAGEKIRAIISKRVKGVKHAYIG
RAEGTRAKDGNIGVENASPEAIIRALENAKITLEEKREEFTIQDLIYFGLSADPKAKVRRELLGKELRIGYGNANQVLSR
LNNYGITKEEFVKAIEKIEKMI
>Mature_182_residues
MIKEVIVVEGRDDITAVKKAIDAEIIAVGGFGINAKVIERIKEAQKRKGVIVFTDPDFAGEKIRAIISKRVKGVKHAYIG
RAEGTRAKDGNIGVENASPEAIIRALENAKITLEEKREEFTIQDLIYFGLSADPKAKVRRELLGKELRIGYGNANQVLSR
LNNYGITKEEFVKAIEKIEKMI

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004466
- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 20221; Mature: 20221

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKEVIVVEGRDDITAVKKAIDAEIIAVGGFGINAKVIERIKEAQKRKGVIVFTDPDFAG
CCCCEEEEECCCHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEECCCCCH
EKIRAIISKRVKGVKHAYIGRAEGTRAKDGNIGVENASPEAIIRALENAKITLEEKREEF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEHHHHHHH
TIQDLIYFGLSADPKAKVRRELLGKELRIGYGNANQVLSRLNNYGITKEEFVKAIEKIEK
HHHHHHHHCCCCCCHHHHHHHHCCHHHEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
MI
CC
>Mature Secondary Structure
MIKEVIVVEGRDDITAVKKAIDAEIIAVGGFGINAKVIERIKEAQKRKGVIVFTDPDFAG
CCCCEEEEECCCHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEECCCCCH
EKIRAIISKRVKGVKHAYIGRAEGTRAKDGNIGVENASPEAIIRALENAKITLEEKREEF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEHHHHHHH
TIQDLIYFGLSADPKAKVRRELLGKELRIGYGNANQVLSRLNNYGITKEEFVKAIEKIEK
HHHHHHHHCCCCCCHHHHHHHHCCHHHEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
MI
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]