| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311481
Identifier: 18311481
GI number: 18311481
Start: 2861299
End: 2862513
Strand: Reverse
Name: 18311481
Synonym: CPE2499
Alternate gene names: NA
Gene position: 2862513-2861299 (Counterclockwise)
Preceding gene: 18311483
Following gene: 18311479
Centisome position: 94.43
GC content: 28.4
Gene sequence:
>1215_bases ATGTGCAATTTTTTTGAAGAAAAGTTTGAACAAATAAATAAATTGAAACATTTAATGACTTTATCTAAAGGAAATAATCA AGCTAAAACATATAAAGAACAAATAGAAGATATTTTTAAAGAATTTCAAAGGGATTATATAAGGGAAGAAAGTAATACTA TGCTTATTCTGACAAAGGAGGAATTAGCAAATTTTAATGGGGAAAATGGAAATTCAGCCTATATTTCTATAGATGGTATT ATATATGATATTTCAAATATAGAATTGTTTAAACAAAGTCCTTATAACAGTTTAAAACTTGGAAGTGATGTAACAGAGGC CTTTGATAAATTAAATAATGGAGATGAATCTATATTAAGAGATATTCCTATGGTAGGGCTTTTAGCAGAGCCTGAGGAAG CTGAAATTATGGATGAAGTAGAAGAGTATTATCCACAACAAAGGCTAAAAATAATGAGTTCAGAAGAACTTAAAAAATAT AATGGAGAGAATGGAAGTTTAGCATATGTAGCTATTGAAGGAATAGTTTATGATATAAGTAATTTATCAGTTTTAGAGCT ATTTAATGGGACAAACTTAAGATTAGGCTCTGATATTACTGAAGAATTTAAAACTTATTACAGAGGGGATAAAGAGCTTT TAAAGGGTGCTAAAGAAGTAGCAATATTACATGATTTCAATGAAAGTCAAAGGGGAAAACATATTGAACGCAATCTTAAG GAGTTAACTTTAAAGGAATTATCAAAATATAATGGAGAAAATGGAAATCCTGCTTATATAGCAGTTAATGGAATAATATA CGATGTTACAAATGAAGCTGTTTTTAAAAAGAGTCCACATAATTCAGTGAAATTAGGCACTGATATTACCAAATACTTTA AAGGATGTCACAATGCAGATGAAGGCGTATTAGCTAAGCTTCCTATAGTTGGAACAGTTATATGTAAAAAAGAGCCCTTG ATTAAGGATACGGGTTCTAAGGAATTTAATATAAATGAACTTAGTAATTATAATGGAAAGAATGGAAAGCCTCCTTATAT AGCTATATTTGGTACAGTATATGATTTAACTGACGTAGATAAATGGCAAGAAAAAAACATAAAAGTAGGATGTGATTTAA CAGGAGAATATAAAGAGGTTTATGGGAATGATAAATCTCATTTAAAAAATTTAAAAGTTGCAGGGGTTTTAACTTGTAGT TTAAATGATTATTAA
Upstream 100 bases:
>100_bases TATTTAGTTCGATTAATAATGATTTTACAATAAAACATTAACATTTGCAATATTAACCACATAGAAATATATAGATATAG TGTGTAATATAGGAGTTTTT
Downstream 100 bases:
>100_bases AAAAATAAAAGCTAGATTCACTTATGAACTACTTATTATAAAATTTAAAGAGAGAATTCTATAAAGTTTTTACACAAAAA AATTAAAATTCTCATCTATT
Product: heme/steroid binding domain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 404; Mature: 404
Protein sequence:
>404_residues MCNFFEEKFEQINKLKHLMTLSKGNNQAKTYKEQIEDIFKEFQRDYIREESNTMLILTKEELANFNGENGNSAYISIDGI IYDISNIELFKQSPYNSLKLGSDVTEAFDKLNNGDESILRDIPMVGLLAEPEEAEIMDEVEEYYPQQRLKIMSSEELKKY NGENGSLAYVAIEGIVYDISNLSVLELFNGTNLRLGSDITEEFKTYYRGDKELLKGAKEVAILHDFNESQRGKHIERNLK ELTLKELSKYNGENGNPAYIAVNGIIYDVTNEAVFKKSPHNSVKLGTDITKYFKGCHNADEGVLAKLPIVGTVICKKEPL IKDTGSKEFNINELSNYNGKNGKPPYIAIFGTVYDLTDVDKWQEKNIKVGCDLTGEYKEVYGNDKSHLKNLKVAGVLTCS LNDY
Sequences:
>Translated_404_residues MCNFFEEKFEQINKLKHLMTLSKGNNQAKTYKEQIEDIFKEFQRDYIREESNTMLILTKEELANFNGENGNSAYISIDGI IYDISNIELFKQSPYNSLKLGSDVTEAFDKLNNGDESILRDIPMVGLLAEPEEAEIMDEVEEYYPQQRLKIMSSEELKKY NGENGSLAYVAIEGIVYDISNLSVLELFNGTNLRLGSDITEEFKTYYRGDKELLKGAKEVAILHDFNESQRGKHIERNLK ELTLKELSKYNGENGNPAYIAVNGIIYDVTNEAVFKKSPHNSVKLGTDITKYFKGCHNADEGVLAKLPIVGTVICKKEPL IKDTGSKEFNINELSNYNGKNGKPPYIAIFGTVYDLTDVDKWQEKNIKVGCDLTGEYKEVYGNDKSHLKNLKVAGVLTCS LNDY >Mature_404_residues MCNFFEEKFEQINKLKHLMTLSKGNNQAKTYKEQIEDIFKEFQRDYIREESNTMLILTKEELANFNGENGNSAYISIDGI IYDISNIELFKQSPYNSLKLGSDVTEAFDKLNNGDESILRDIPMVGLLAEPEEAEIMDEVEEYYPQQRLKIMSSEELKKY NGENGSLAYVAIEGIVYDISNLSVLELFNGTNLRLGSDITEEFKTYYRGDKELLKGAKEVAILHDFNESQRGKHIERNLK ELTLKELSKYNGENGNPAYIAVNGIIYDVTNEAVFKKSPHNSVKLGTDITKYFKGCHNADEGVLAKLPIVGTVICKKEPL IKDTGSKEFNINELSNYNGKNGKPPYIAIFGTVYDLTDVDKWQEKNIKVGCDLTGEYKEVYGNDKSHLKNLKVAGVLTCS LNDY
Specific function: Unknown
COG id: COG4892
COG function: function code R; Predicted heme/steroid binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45823; Mature: 45823
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCNFFEEKFEQINKLKHLMTLSKGNNQAKTYKEQIEDIFKEFQRDYIREESNTMLILTKE CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHH ELANFNGENGNSAYISIDGIIYDISNIELFKQSPYNSLKLGSDVTEAFDKLNNGDESILR HHHCCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHH DIPMVGLLAEPEEAEIMDEVEEYYPQQRLKIMSSEELKKYNGENGSLAYVAIEGIVYDIS HCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHCHHHHHHHCCCCCCEEEEEEEEEEEECC NLSVLELFNGTNLRLGSDITEEFKTYYRGDKELLKGAKEVAILHDFNESQRGKHIERNLK CCEEEEEECCCCEEECCHHHHHHHHHHCCCHHHHCCHHHEEEEECCCCCCCCHHHHHHHH ELTLKELSKYNGENGNPAYIAVNGIIYDVTNEAVFKKSPHNSVKLGTDITKYFKGCHNAD HHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCHHCCCCCCCCEEECHHHHHHHHHCCCCC EGVLAKLPIVGTVICKKEPLIKDTGSKEFNINELSNYNGKNGKPPYIAIFGTVYDLTDVD CCCEEECCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEEEECCCCCCC KWQEKNIKVGCDLTGEYKEVYGNDKSHLKNLKVAGVLTCSLNDY HHHHCCEEEECCCCCCHHHHCCCCHHHHHCEEEEEEEEEECCCC >Mature Secondary Structure MCNFFEEKFEQINKLKHLMTLSKGNNQAKTYKEQIEDIFKEFQRDYIREESNTMLILTKE CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHH ELANFNGENGNSAYISIDGIIYDISNIELFKQSPYNSLKLGSDVTEAFDKLNNGDESILR HHHCCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHH DIPMVGLLAEPEEAEIMDEVEEYYPQQRLKIMSSEELKKYNGENGSLAYVAIEGIVYDIS HCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHCHHHHHHHCCCCCCEEEEEEEEEEEECC NLSVLELFNGTNLRLGSDITEEFKTYYRGDKELLKGAKEVAILHDFNESQRGKHIERNLK CCEEEEEECCCCEEECCHHHHHHHHHHCCCHHHHCCHHHEEEEECCCCCCCCHHHHHHHH ELTLKELSKYNGENGNPAYIAVNGIIYDVTNEAVFKKSPHNSVKLGTDITKYFKGCHNAD HHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCHHCCCCCCCCEEECHHHHHHHHHCCCCC EGVLAKLPIVGTVICKKEPLIKDTGSKEFNINELSNYNGKNGKPPYIAIFGTVYDLTDVD CCCEEECCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEEEECCCCCCC KWQEKNIKVGCDLTGEYKEVYGNDKSHLKNLKVAGVLTCSLNDY HHHHCCEEEECCCCCCHHHHCCCCHHHHHCEEEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA