Click here to switch to the map view.

The map label for this gene is ypdF [C]

Identifier: 18311479

GI number: 18311479

Start: 2859220

End: 2860296

Strand: Reverse

Name: ypdF [C]

Synonym: CPE2497

Alternate gene names: 18311479

Gene position: 2860296-2859220 (Counterclockwise)

Preceding gene: 18311481

Following gene: 18311474

Centisome position: 94.35

GC content: 30.64

Gene sequence:

>1077_bases
GTGAAAGAAGGAAGAGTAAAAAGAATTTTAGAAGCTATGAAGGCAAATGATATACCTCAAATGTTAGTTTCTTCACCTGC
ATCAATATTTTATTTAACAGGTAAGTGGATATCACCTGGAGAAAGAATGATAACACTTTACTTAAATACAAAGGGTGAAC
AAAAGTTTATAGTAAATGAATTATTTCCAATAAATGAGGACTTAGGTGTTGATATTTTATGGTACAACGATACTATGAAT
CCAATAGACATCTTAGATAAGATAATAGATCATGAAGAAGTATTAGGAATAGATAAGGATTGGAAGGCACATTTCTTAAT
TCAATTATTAGATAGAAATTCAGCAAAGAAATTTGTTAATGGATCTCCAATAGTTGATAGAGTTAGAATGAGAAAAGATG
ATGAAGAAATAGCTTTAATGAAAGAAGCTTCAAGAATAAATGATATTGTAGTAGAAAAAGCAATAAAGAGTTTAAAAGAG
GGCATGACTGAAAAAGAAGTAGTAGAAGTTTTAGGAAAAGGTTATGCTGAATATGGATGTCAAGGATATTCTTTTGAGCC
AATCGTTGCTTTTGCAGCTAATGCAGCAGATCCACATGCAGAGTCAGGAGAACAAAAATTAGAAAAAGGTATGGGAGTTC
TAATAGATACTGGATGTAGAAAAGATTATTACTGTTCAGATATGACTAGATGTGTATTCTTTGGTGAGCCAACAGAACAT
CAAAAAGAAATATTTAATACAGTTTTAGAAGCAAATAAAAAAGCCATAGATATGATTAAACCAGGAGTTAGATTCTGTGA
TATAGATAAAGCTGCTAGAGATGTTATAGAAAATAAAGGTTATGGCAAGTATTTCACTCATAGAACAGGTCATTCAATAG
GAATAGAAACTCATGATTTTGGTGATGTTGGATCAACTAATACTGATGAAGTTAAACCAGGTATGATTTTCTCTGTAGAA
CCAGGAATATATCTTCAAGGAGATATGGGAGTAAGAATAGAGGATTTAGTATTAGTAACTGAAGATGGATGTGAAAGATT
AAATCACTTAAACAAAGAATTAGTTGTTATTAAATAA

Upstream 100 bases:

>100_bases
AAAAAAATAAATATTACAAATAAATGTATATTATTAGATAATTTGAAATTATGATATAATTTATTTAATGAATTTTAACT
ATTAGAGAGGAGCGATCAAG

Downstream 100 bases:

>100_bases
TAGTTTAAATAAAAAGAACATTCTTCAATTGAAGAATGTTCTTTTATTTTTAAGTAATTTAAATTTTTCTAATTATTAAG
CACTAAATAAGATACCTGCT

Product: metallopeptidase, family M24

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MKEGRVKRILEAMKANDIPQMLVSSPASIFYLTGKWISPGERMITLYLNTKGEQKFIVNELFPINEDLGVDILWYNDTMN
PIDILDKIIDHEEVLGIDKDWKAHFLIQLLDRNSAKKFVNGSPIVDRVRMRKDDEEIALMKEASRINDIVVEKAIKSLKE
GMTEKEVVEVLGKGYAEYGCQGYSFEPIVAFAANAADPHAESGEQKLEKGMGVLIDTGCRKDYYCSDMTRCVFFGEPTEH
QKEIFNTVLEANKKAIDMIKPGVRFCDIDKAARDVIENKGYGKYFTHRTGHSIGIETHDFGDVGSTNTDEVKPGMIFSVE
PGIYLQGDMGVRIEDLVLVTEDGCERLNHLNKELVVIK

Sequences:

>Translated_358_residues
MKEGRVKRILEAMKANDIPQMLVSSPASIFYLTGKWISPGERMITLYLNTKGEQKFIVNELFPINEDLGVDILWYNDTMN
PIDILDKIIDHEEVLGIDKDWKAHFLIQLLDRNSAKKFVNGSPIVDRVRMRKDDEEIALMKEASRINDIVVEKAIKSLKE
GMTEKEVVEVLGKGYAEYGCQGYSFEPIVAFAANAADPHAESGEQKLEKGMGVLIDTGCRKDYYCSDMTRCVFFGEPTEH
QKEIFNTVLEANKKAIDMIKPGVRFCDIDKAARDVIENKGYGKYFTHRTGHSIGIETHDFGDVGSTNTDEVKPGMIFSVE
PGIYLQGDMGVRIEDLVLVTEDGCERLNHLNKELVVIK
>Mature_358_residues
MKEGRVKRILEAMKANDIPQMLVSSPASIFYLTGKWISPGERMITLYLNTKGEQKFIVNELFPINEDLGVDILWYNDTMN
PIDILDKIIDHEEVLGIDKDWKAHFLIQLLDRNSAKKFVNGSPIVDRVRMRKDDEEIALMKEASRINDIVVEKAIKSLKE
GMTEKEVVEVLGKGYAEYGCQGYSFEPIVAFAANAADPHAESGEQKLEKGMGVLIDTGCRKDYYCSDMTRCVFFGEPTEH
QKEIFNTVLEANKKAIDMIKPGVRFCDIDKAARDVIENKGYGKYFTHRTGHSIGIETHDFGDVGSTNTDEVKPGMIFSVE
PGIYLQGDMGVRIEDLVLVTEDGCERLNHLNKELVVIK

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family [H]

Homologues:

Organism=Homo sapiens, GI11559925, Length=255, Percent_Identity=27.0588235294118, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI93141226, Length=233, Percent_Identity=29.6137339055794, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI149589008, Length=292, Percent_Identity=26.7123287671233, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI260593665, Length=292, Percent_Identity=26.7123287671233, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI264681563, Length=133, Percent_Identity=36.0902255639098, Blast_Score=69, Evalue=5e-12,
Organism=Escherichia coli, GI1788728, Length=245, Percent_Identity=38.7755102040816, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1789275, Length=264, Percent_Identity=26.8939393939394, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1786364, Length=245, Percent_Identity=25.7142857142857, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17508215, Length=289, Percent_Identity=26.643598615917, Blast_Score=80, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321118, Length=303, Percent_Identity=24.0924092409241, Blast_Score=84, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6320922, Length=257, Percent_Identity=23.7354085603113, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI19920384, Length=267, Percent_Identity=26.2172284644195, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21357079, Length=290, Percent_Identity=24.4827586206897, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994
- InterPro:   IPR001131 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 40409; Mature: 40409

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEGRVKRILEAMKANDIPQMLVSSPASIFYLTGKWISPGERMITLYLNTKGEQKFIVNE
CCCCHHHHHHHHHHCCCCHHHHHCCCCEEEEEECCEECCCCEEEEEEEECCCCCEEHHHH
LFPINEDLGVDILWYNDTMNPIDILDKIIDHEEVLGIDKDWKAHFLIQLLDRNSAKKFVN
CCCCCCCCCEEEEEECCCCCHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHCCCHHHHCC
GSPIVDRVRMRKDDEEIALMKEASRINDIVVEKAIKSLKEGMTEKEVVEVLGKGYAEYGC
CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHCC
QGYSFEPIVAFAANAADPHAESGEQKLEKGMGVLIDTGCRKDYYCSDMTRCVFFGEPTEH
CCCCCCHHHEEECCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCCCHH
QKEIFNTVLEANKKAIDMIKPGVRFCDIDKAARDVIENKGYGKYFTHRTGHSIGIETHDF
HHHHHHHHHHCCHHHHHHHCCCCEEECCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCC
GDVGSTNTDEVKPGMIFSVEPGIYLQGDMGVRIEDLVLVTEDGCERLNHLNKELVVIK
CCCCCCCCCCCCCCEEEEECCCEEEECCCCCEEEEEEEECCHHHHHHHHCCCEEEEEC
>Mature Secondary Structure
MKEGRVKRILEAMKANDIPQMLVSSPASIFYLTGKWISPGERMITLYLNTKGEQKFIVNE
CCCCHHHHHHHHHHCCCCHHHHHCCCCEEEEEECCEECCCCEEEEEEEECCCCCEEHHHH
LFPINEDLGVDILWYNDTMNPIDILDKIIDHEEVLGIDKDWKAHFLIQLLDRNSAKKFVN
CCCCCCCCCEEEEEECCCCCHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHCCCHHHHCC
GSPIVDRVRMRKDDEEIALMKEASRINDIVVEKAIKSLKEGMTEKEVVEVLGKGYAEYGC
CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHCC
QGYSFEPIVAFAANAADPHAESGEQKLEKGMGVLIDTGCRKDYYCSDMTRCVFFGEPTEH
CCCCCCHHHEEECCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCCCHH
QKEIFNTVLEANKKAIDMIKPGVRFCDIDKAARDVIENKGYGKYFTHRTGHSIGIETHDF
HHHHHHHHHHCCHHHHHHHCCCCEEECCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCC
GDVGSTNTDEVKPGMIFSVEPGIYLQGDMGVRIEDLVLVTEDGCERLNHLNKELVVIK
CCCCCCCCCCCCCCEEEEECCCEEEECCCCCEEEEEEEECCHHHHHHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA