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The map label for this gene is yabR [H]

Identifier: 18311456

GI number: 18311456

Start: 2834751

End: 2835155

Strand: Reverse

Name: yabR [H]

Synonym: CPE2474

Alternate gene names: 18311456

Gene position: 2835155-2834751 (Counterclockwise)

Preceding gene: 18311457

Following gene: 18311455

Centisome position: 93.53

GC content: 29.88

Gene sequence:

>405_bases
ATGACCTTAATGGCAGGAAACATATTAGAGGGTAGAATAATTAACATCACAAACTTTGGTGCGTTTGTTGAAGTGGAAGG
AAAGACAGGTTTAGTTCATATATCTGAAGTAGCAGATACTTATGTTAAAGATATAAGAGAGCATCTTAAAGAAGATGACA
AAGTTAAAGTGAAAGTAATATCAGTTGATGATAAAGGCAAAATAAGCTTATCAATAAAGCAAGCTATGCCACCAAAGAAG
AAATCTGTTAAACCTGCAGATTTTGATTGGAATAATGAAAAGAAAGCTAAGCCAAAACAAAACTTTGAAGATATAATGTC
AAAGTTTTTAAAGGATAGTGAAGAAAGACTTCAAGATGTAAAAAAACATCAAGATGTAAAACAAAGAAAAAGAAAATCAA
TATAA

Upstream 100 bases:

>100_bases
AGCAAAATAATTCTGAAGTAAAAAACAATCAGAATAAATAAGGTTATTATTAAAAATAACATATATTTTATTTATAAATT
TAAGGAGGAAACTTTTAAAC

Downstream 100 bases:

>100_bases
TATTTCTTAAAATCCCTTGGAGCATATCTAAGGGATTTTAAATTTAGCTTTTATATTTTATCTTTGTAGAATTTAATACT
TATTTAAAATAGAATTTCAA

Product: hypothetical protein

Products: RNAn; a nucleoside diphosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MTLMAGNILEGRIINITNFGAFVEVEGKTGLVHISEVADTYVKDIREHLKEDDKVKVKVISVDDKGKISLSIKQAMPPKK
KSVKPADFDWNNEKKAKPKQNFEDIMSKFLKDSEERLQDVKKHQDVKQRKRKSI

Sequences:

>Translated_134_residues
MTLMAGNILEGRIINITNFGAFVEVEGKTGLVHISEVADTYVKDIREHLKEDDKVKVKVISVDDKGKISLSIKQAMPPKK
KSVKPADFDWNNEKKAKPKQNFEDIMSKFLKDSEERLQDVKKHQDVKQRKRKSI
>Mature_133_residues
TLMAGNILEGRIINITNFGAFVEVEGKTGLVHISEVADTYVKDIREHLKEDDKVKVKVISVDDKGKISLSIKQAMPPKKK
SVKPADFDWNNEKKAKPKQNFEDIMSKFLKDSEERLQDVKKHQDVKQRKRKSI

Specific function: Involved In Mrna Degradation. Hydrolyzes Single-Stranded Polyribonucleotides Processively In The 3' To 5' Direction. Involved In The RNA Degradosome, A Multi-Enzyme Complex Important In RNA Processing And Messenger RNA Degradation. [C]

COG id: COG1098

COG function: function code J; Predicted RNA binding protein (contains ribosomal protein S1 domain)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI145693187, Length=71, Percent_Identity=46.4788732394366, Blast_Score=66, Evalue=6e-13,
Organism=Escherichia coli, GI87082262, Length=102, Percent_Identity=38.2352941176471, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1000 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 3328 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 3,000 Molecules/Cell In: Glucose minimal media

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967 [H]

Pfam domain/function: PF00575 S1 [H]

EC number: 2.7.7.8 [C]

Molecular weight: Translated: 15379; Mature: 15248

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLMAGNILEGRIINITNFGAFVEVEGKTGLVHISEVADTYVKDIREHLKEDDKVKVKVI
CCCCCCCCCCCEEEEEECCCEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEEEE
SVDDKGKISLSIKQAMPPKKKSVKPADFDWNNEKKAKPKQNFEDIMSKFLKDSEERLQDV
EECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHH
KKHQDVKQRKRKSI
HHHHHHHHHHHCCC
>Mature Secondary Structure 
TLMAGNILEGRIINITNFGAFVEVEGKTGLVHISEVADTYVKDIREHLKEDDKVKVKVI
CCCCCCCCCCEEEEEECCCEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEEEE
SVDDKGKISLSIKQAMPPKKKSVKPADFDWNNEKKAKPKQNFEDIMSKFLKDSEERLQDV
EECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHH
KKHQDVKQRKRKSI
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): 4500 [C]

Specific activity: NA

Km value (mM): NA

Substrates: RNAn+1; phosphate [C]

Specific reaction: RNAn+1 + phosphate = RNAn + a nucleoside diphosphate [C]

General reaction: Nucleotidyl group transfer [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8113187; 7584024; 9384377 [H]