| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is 18311310
Identifier: 18311310
GI number: 18311310
Start: 2679676
End: 2680200
Strand: Direct
Name: 18311310
Synonym: CPE2328
Alternate gene names: NA
Gene position: 2679676-2680200 (Clockwise)
Preceding gene: 18311304
Following gene: 18311312
Centisome position: 88.4
GC content: 28.76
Gene sequence:
>525_bases ATGAGCTATACTACAGAAAAGCAACCTCAAGGAAAAGCCTTGGATATAAAAGGATTTTTAAGGGAAGCTTTAATCTCAGA AATAGTTGCCATCAATGGTTATAGTAAACATATAGATGAAATTGCTTTAGTGGATATAAAAGAATTATTACATCACATAA TGGAAGATGAAAAAAGACACTATGGTCAATTTTTAGAAGCTCTCAGAAGATATGATAAAGAGGAATTTGAAGTCTATGTA GAATCAGTTGATCATGTAGAAATAAAAGACAAACCTTTAAAGAAAACATATCACGAAAATAAAAAATTAACTGCTTATAG TATTTTAAATAAAATTCGAGATGATATTAAAGGAGAATACGAGGCCATATTACTCTATGATGATTTAATAAATAAAATAG AAGATAAATGCCTTGTTAAAATGATAAGAGATATAACTAAGGAGGAAAAAGAGCATGTGGAGGAACTTACCCTTGCTTTA ATGAGACTTGATTCAGATAAGTATGGACCAATTGAAGATAATTAA
Upstream 100 bases:
>100_bases AAAAAAATCTTGGAATAAGTAAATATCTATCTTTAACTGTTCCTTTTCCTAGGAAAAATCATATTATAAATACTATAAAA ATAATTTAGGAGATTTTTTT
Downstream 100 bases:
>100_bases TATAACTTTTAATAATCAAATAAATAAAAATATTTTAAATCATAAAAAGCTATAAATAACATGAATAGTTTTAAATAAAA TTATCATGTATTTATAGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MSYTTEKQPQGKALDIKGFLREALISEIVAINGYSKHIDEIALVDIKELLHHIMEDEKRHYGQFLEALRRYDKEEFEVYV ESVDHVEIKDKPLKKTYHENKKLTAYSILNKIRDDIKGEYEAILLYDDLINKIEDKCLVKMIRDITKEEKEHVEELTLAL MRLDSDKYGPIEDN
Sequences:
>Translated_174_residues MSYTTEKQPQGKALDIKGFLREALISEIVAINGYSKHIDEIALVDIKELLHHIMEDEKRHYGQFLEALRRYDKEEFEVYV ESVDHVEIKDKPLKKTYHENKKLTAYSILNKIRDDIKGEYEAILLYDDLINKIEDKCLVKMIRDITKEEKEHVEELTLAL MRLDSDKYGPIEDN >Mature_173_residues SYTTEKQPQGKALDIKGFLREALISEIVAINGYSKHIDEIALVDIKELLHHIMEDEKRHYGQFLEALRRYDKEEFEVYVE SVDHVEIKDKPLKKTYHENKKLTAYSILNKIRDDIKGEYEAILLYDDLINKIEDKCLVKMIRDITKEEKEHVEELTLALM RLDSDKYGPIEDN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20542; Mature: 20411
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYTTEKQPQGKALDIKGFLREALISEIVAINGYSKHIDEIALVDIKELLHHIMEDEKRH CCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH YGQFLEALRRYDKEEFEVYVESVDHVEIKDKPLKKTYHENKKLTAYSILNKIRDDIKGEY HHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCH EAILLYDDLINKIEDKCLVKMIRDITKEEKEHVEELTLALMRLDSDKYGPIEDN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure SYTTEKQPQGKALDIKGFLREALISEIVAINGYSKHIDEIALVDIKELLHHIMEDEKRH CCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH YGQFLEALRRYDKEEFEVYVESVDHVEIKDKPLKKTYHENKKLTAYSILNKIRDDIKGEY HHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCH EAILLYDDLINKIEDKCLVKMIRDITKEEKEHVEELTLALMRLDSDKYGPIEDN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA