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The map label for this gene is ydcI [H]

Identifier: 18311150

GI number: 18311150

Start: 2484325

End: 2486487

Strand: Reverse

Name: ydcI [H]

Synonym: CPE2168

Alternate gene names: 18311150

Gene position: 2486487-2484325 (Counterclockwise)

Preceding gene: 18311152

Following gene: 18311149

Centisome position: 82.02

GC content: 29.63

Gene sequence:

>2163_bases
ATGGACAATATAAATCATATTTTATCAAAGGAACTTGGTATTTCATTAAAACAGGTAACAAGCGTTATAGAGATGTTAGA
TGAAGGAAATACAGTACCTTTCATAGCTAGATATAGAAAAGAAAGAACTGGTGGATTAACAGATGAGGTTCTAAGAAAAT
TTAATGAGAGATTAACATATCTAAGAAATTTAGAAAGTAGAAAAGAAGATGTTTTAAGAATAATAGAGGAGCAAGAAAAA
TTAACTCCAGAATTAAAATTAAAAATTGAGAAAGCTACTACTCTTACTGAGATTGAAGATATATATAGACCTTTTAAAGC
TAAAAAGAGAACAAGAGCTACCATGGCTGTTGAAAAAGGATTAAAGCCATTAGCTGAGCTTATTTTATCAGGAGAGTTTA
ATGGTGATATAGTAGAAGAGGCTAATAAATATATTAATGAAGAAAAAGGTGTTAAAAATGAAGAGGAAGCTCTTCAAGGG
GCTATGGATATTATAAGTGAAATAATATCTGATAATGCTGATTATAGAAAATGGATTAGAAATTTTGTTCAAAAGGATGG
AATAATTCAGGTAAAAGGAAGCAGTGAAGAACAAACACCTTATGAAATGTATTATGATTATAAGGAACCTGTTAGAACAA
TTCCATCTCATAGAATATTAGCTATAAATAGAGGAGAAAAGGAAAAAATTCTTTCTGTTAAAGTAACTTGTAATGATGAT
AAAATTATAGATTATTTAAATAAAAAAGTTTTAAAGGAAAATAAAATTACTGATAAGTATTTAGAAGAAAGCATTAAGGA
TTCATTTAAAAGACTTATATATCCTTCAATAGAAAGGGAAATAAGAAGTGAATTAACCTCTAAGGGAGAAGAGGGAGCTA
TTGATATATTTAAGGCTAATTTAAAAGCTCTTTTAATGCAAGCGCCTATTAAGGGGAAAGTTGTAATGGGATTTGACCCT
GGCTTTAGAACTGGATGTAAGGTAGCAATCTTAGATGAAACAGGAAAATTTGTTGAGAATACAACAGTTTATCCAACAGC
TCCTCAAAATAGAATTGATGAAACAATAAGTACACTTAAAAAACTTATTAAAAAACATGGAGTTCAAGTTATTTCTTTAG
GAAATGGAACAGCTTCAAGAGAATCAGAAGAAGTAATTGCAAAAATGCTTAAGGAAATAAAAGATGAAACAGGAAAAGAA
TTATTTTATGTTATAGTTTCTGAGGCAGGAGCTTCTGTCTATTCAGCATCAGAACTTGCAAATAAGGAATATCCAGACTT
AGATGTAACTGTAAGAGGAGCAATTTCTATAGGAAGAAGACTTCAAGATCCATTAGCTGAGCTTGTTAAAATAGATCCTA
AGGCTATAGGAGTAGGACAATATCAACACGATGTAACTCAGAAAAAACTTGATGAATCTTTAGCTGGTATAGTTGAGGAT
TGTGTTAATAATGTTGGAGTAGATTTAAATATAGCAACTCCATCACTACTAAGTTATATTTCAGGGATAAATGCTTCAAT
AGCTAAAAATATTGTTGATTATAGAGAGGAAAATGGTAAGTTTAAAAGTAGAAAAGAGCTTTTAAAAGTTAAAAGATTAG
GACAAAAAGCTTATGAACAATGTGCAGGATTCTTAAGGGTTATGGAAAGTAAAGAAGCTTTAGATAATACTTCAGTTCAT
CCAGAGTCATATAAAGTAGCTAAGGAACTTATAAAAACTTTAGGATATACAGAAGAAGATTTAAAAAATGGCAAATTAGT
AGATATAGATGAGAGAGTAAAAGCAAAAGGAATTTCTAACTTAGCAAAAGAATTAGAAGTTGGAGAACCAACACTTAATG
ATATTATAAAGGAAATTAAAAAGCCTGGAAGAGATCCAAGAGAGGAATTACCTAAACCAATATTTAAGTCTGGCGTAATA
GAAATGAAAGATTTAAAACCAGGTATGATTTTAATGGGAACAGTTAGAAATGTATCTGATTTTGGTGCTTTTGTAGATAT
TGGAGTTCACCAAGATGGATTAGTTCATAAGAGCCAAATGGCAGATAAATTTGTTAAACATCCACTTGATATAGTTAAGG
TTGGAGATATAGTAGAAGTTAGAATATTAGATGTTGATTTAAAAAGAAAGAGAATTTCATTATCAATGAAAAAAGAAGGT
TAA

Upstream 100 bases:

>100_bases
TAAATAATTAGGTTATAATTAAAAGTATGAGATTTAAATTATGTTTATTCAAAAAATTACTATTAATATTAAATTAATAG
ATAAAACATAGGAGGACATT

Downstream 100 bases:

>100_bases
GTTAGAAAATTAATTAAAATAAGTGAAAATTTTAGTAGATAAAAATATTTAATATATTGAAATTTATATAAAAAAGAGTT
AAAATTATAACAAATGAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 720; Mature: 720

Protein sequence:

>720_residues
MDNINHILSKELGISLKQVTSVIEMLDEGNTVPFIARYRKERTGGLTDEVLRKFNERLTYLRNLESRKEDVLRIIEEQEK
LTPELKLKIEKATTLTEIEDIYRPFKAKKRTRATMAVEKGLKPLAELILSGEFNGDIVEEANKYINEEKGVKNEEEALQG
AMDIISEIISDNADYRKWIRNFVQKDGIIQVKGSSEEQTPYEMYYDYKEPVRTIPSHRILAINRGEKEKILSVKVTCNDD
KIIDYLNKKVLKENKITDKYLEESIKDSFKRLIYPSIEREIRSELTSKGEEGAIDIFKANLKALLMQAPIKGKVVMGFDP
GFRTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLIKKHGVQVISLGNGTASRESEEVIAKMLKEIKDETGKE
LFYVIVSEAGASVYSASELANKEYPDLDVTVRGAISIGRRLQDPLAELVKIDPKAIGVGQYQHDVTQKKLDESLAGIVED
CVNNVGVDLNIATPSLLSYISGINASIAKNIVDYREENGKFKSRKELLKVKRLGQKAYEQCAGFLRVMESKEALDNTSVH
PESYKVAKELIKTLGYTEEDLKNGKLVDIDERVKAKGISNLAKELEVGEPTLNDIIKEIKKPGRDPREELPKPIFKSGVI
EMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDIVEVRILDVDLKRKRISLSMKKEG

Sequences:

>Translated_720_residues
MDNINHILSKELGISLKQVTSVIEMLDEGNTVPFIARYRKERTGGLTDEVLRKFNERLTYLRNLESRKEDVLRIIEEQEK
LTPELKLKIEKATTLTEIEDIYRPFKAKKRTRATMAVEKGLKPLAELILSGEFNGDIVEEANKYINEEKGVKNEEEALQG
AMDIISEIISDNADYRKWIRNFVQKDGIIQVKGSSEEQTPYEMYYDYKEPVRTIPSHRILAINRGEKEKILSVKVTCNDD
KIIDYLNKKVLKENKITDKYLEESIKDSFKRLIYPSIEREIRSELTSKGEEGAIDIFKANLKALLMQAPIKGKVVMGFDP
GFRTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLIKKHGVQVISLGNGTASRESEEVIAKMLKEIKDETGKE
LFYVIVSEAGASVYSASELANKEYPDLDVTVRGAISIGRRLQDPLAELVKIDPKAIGVGQYQHDVTQKKLDESLAGIVED
CVNNVGVDLNIATPSLLSYISGINASIAKNIVDYREENGKFKSRKELLKVKRLGQKAYEQCAGFLRVMESKEALDNTSVH
PESYKVAKELIKTLGYTEEDLKNGKLVDIDERVKAKGISNLAKELEVGEPTLNDIIKEIKKPGRDPREELPKPIFKSGVI
EMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDIVEVRILDVDLKRKRISLSMKKEG
>Mature_720_residues
MDNINHILSKELGISLKQVTSVIEMLDEGNTVPFIARYRKERTGGLTDEVLRKFNERLTYLRNLESRKEDVLRIIEEQEK
LTPELKLKIEKATTLTEIEDIYRPFKAKKRTRATMAVEKGLKPLAELILSGEFNGDIVEEANKYINEEKGVKNEEEALQG
AMDIISEIISDNADYRKWIRNFVQKDGIIQVKGSSEEQTPYEMYYDYKEPVRTIPSHRILAINRGEKEKILSVKVTCNDD
KIIDYLNKKVLKENKITDKYLEESIKDSFKRLIYPSIEREIRSELTSKGEEGAIDIFKANLKALLMQAPIKGKVVMGFDP
GFRTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLKKLIKKHGVQVISLGNGTASRESEEVIAKMLKEIKDETGKE
LFYVIVSEAGASVYSASELANKEYPDLDVTVRGAISIGRRLQDPLAELVKIDPKAIGVGQYQHDVTQKKLDESLAGIVED
CVNNVGVDLNIATPSLLSYISGINASIAKNIVDYREENGKFKSRKELLKVKRLGQKAYEQCAGFLRVMESKEALDNTSVH
PESYKVAKELIKTLGYTEEDLKNGKLVDIDERVKAKGISNLAKELEVGEPTLNDIIKEIKKPGRDPREELPKPIFKSGVI
EMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDIVEVRILDVDLKRKRISLSMKKEG

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=786, Percent_Identity=35.1145038167939, Blast_Score=421, Evalue=1e-117,
Organism=Homo sapiens, GI27597090, Length=726, Percent_Identity=21.900826446281, Blast_Score=103, Evalue=6e-22,
Organism=Escherichia coli, GI87082262, Length=731, Percent_Identity=46.1012311901505, Blast_Score=637, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=79, Percent_Identity=48.1012658227848, Blast_Score=78, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17511129, Length=762, Percent_Identity=32.2834645669291, Blast_Score=295, Evalue=8e-80,
Organism=Caenorhabditis elegans, GI17552892, Length=801, Percent_Identity=20.2247191011236, Blast_Score=86, Evalue=9e-17,
Organism=Saccharomyces cerevisiae, GI6321552, Length=459, Percent_Identity=23.5294117647059, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI62484314, Length=782, Percent_Identity=33.6317135549872, Blast_Score=420, Evalue=1e-117,
Organism=Drosophila melanogaster, GI24640080, Length=673, Percent_Identity=22.1396731054978, Blast_Score=97, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 81193; Mature: 81193

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNINHILSKELGISLKQVTSVIEMLDEGNTVPFIARYRKERTGGLTDEVLRKFNERLTY
CCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LRNLESRKEDVLRIIEEQEKLTPELKLKIEKATTLTEIEDIYRPFKAKKRTRATMAVEKG
HHHHHHHHHHHHHHHHHHHHCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKPLAELILSGEFNGDIVEEANKYINEEKGVKNEEEALQGAMDIISEIISDNADYRKWIR
HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
NFVQKDGIIQVKGSSEEQTPYEMYYDYKEPVRTIPSHRILAINRGEKEKILSVKVTCNDD
HHHHCCCEEEEECCCCCCCCHHHHCCHHHHHHHCCCCEEEEECCCCCCCEEEEEEEECCH
KIIDYLNKKVLKENKITDKYLEESIKDSFKRLIYPSIEREIRSELTSKGEEGAIDIFKAN
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHH
LKALLMQAPIKGKVVMGFDPGFRTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLK
HHHHHHHCCCCCCEEEECCCCCCCCCEEEEECCCCCHHHCCEECCCCCHHHHHHHHHHHH
KLIKKHGVQVISLGNGTASRESEEVIAKMLKEIKDETGKELFYVIVSEAGASVYSASELA
HHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHC
NKEYPDLDVTVRGAISIGRRLQDPLAELVKIDPKAIGVGQYQHDVTQKKLDESLAGIVED
CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
CVNNVGVDLNIATPSLLSYISGINASIAKNIVDYREENGKFKSRKELLKVKRLGQKAYEQ
HHHHCCCEEEECCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
CAGFLRVMESKEALDNTSVHPESYKVAKELIKTLGYTEEDLKNGKLVDIDERVKAKGISN
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCEECHHHHHHHHHHHH
LAKELEVGEPTLNDIIKEIKKPGRDPREELPKPIFKSGVIEMKDLKPGMILMGTVRNVSD
HHHHHHCCCCHHHHHHHHHHCCCCCCHHHCCCHHHHCCCEEEECCCCCEEEEECHHCHHH
FGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDIVEVRILDVDLKRKRISLSMKKEG
HCCEEEECCCCCCCHHHHHHHHHHHHCCHHHEECCCEEEEEEEECCHHHHHHCCCCCCCC
>Mature Secondary Structure
MDNINHILSKELGISLKQVTSVIEMLDEGNTVPFIARYRKERTGGLTDEVLRKFNERLTY
CCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LRNLESRKEDVLRIIEEQEKLTPELKLKIEKATTLTEIEDIYRPFKAKKRTRATMAVEKG
HHHHHHHHHHHHHHHHHHHHCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKPLAELILSGEFNGDIVEEANKYINEEKGVKNEEEALQGAMDIISEIISDNADYRKWIR
HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
NFVQKDGIIQVKGSSEEQTPYEMYYDYKEPVRTIPSHRILAINRGEKEKILSVKVTCNDD
HHHHCCCEEEEECCCCCCCCHHHHCCHHHHHHHCCCCEEEEECCCCCCCEEEEEEEECCH
KIIDYLNKKVLKENKITDKYLEESIKDSFKRLIYPSIEREIRSELTSKGEEGAIDIFKAN
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHH
LKALLMQAPIKGKVVMGFDPGFRTGCKVAILDETGKFVENTTVYPTAPQNRIDETISTLK
HHHHHHHCCCCCCEEEECCCCCCCCCEEEEECCCCCHHHCCEECCCCCHHHHHHHHHHHH
KLIKKHGVQVISLGNGTASRESEEVIAKMLKEIKDETGKELFYVIVSEAGASVYSASELA
HHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHC
NKEYPDLDVTVRGAISIGRRLQDPLAELVKIDPKAIGVGQYQHDVTQKKLDESLAGIVED
CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
CVNNVGVDLNIATPSLLSYISGINASIAKNIVDYREENGKFKSRKELLKVKRLGQKAYEQ
HHHHCCCEEEECCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
CAGFLRVMESKEALDNTSVHPESYKVAKELIKTLGYTEEDLKNGKLVDIDERVKAKGISN
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCEECHHHHHHHHHHHH
LAKELEVGEPTLNDIIKEIKKPGRDPREELPKPIFKSGVIEMKDLKPGMILMGTVRNVSD
HHHHHHCCCCHHHHHHHHHHCCCCCCHHHCCCHHHHCCCEEEECCCCCEEEEECHHCHHH
FGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDIVEVRILDVDLKRKRISLSMKKEG
HCCEEEECCCCCCCHHHHHHHHHHHHCCHHHEECCCEEEEEEEECCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]